Hybridization kinetics and thermodynamics of molecular beacons (Q39735230)

14 September 2017

Hybridization kinetics and thermodynamics of molecular beacons (English)

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14 September 2017

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14 September 2017

Mark A Behlke

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14 September 2017

Scott D Rose

series ordinal

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14 September 2017

Gang Bao

series ordinal

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14 September 2017

language of work or name

English

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publication date

1 February 2003

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14 September 2017

Nucleic Acids Research

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14 September 2017

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14 September 2017

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14 September 2017

1319-1330

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Efficiencies of fluorescence resonance energy transfer and contact-mediated quenching in oligonucleotide probes

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=150230

Structure-function relationships of shared-stem and conventional molecular beacons

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=150230

Hybridization of DNA and PNA molecular beacons to single-stranded and double-stranded DNA targets.

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=150230

Investigating the kinetics of DNA-DNA and PNA-DNA interactions using surface plasmon resonance-enhanced fluorescence spectroscopy

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=150230

Thermodynamics of specific and nonspecific DNA binding by two DNA-binding domains conjugated to fluorescent probes

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=150230

Single-mismatch detection using gold-quenched fluorescent oligonucleotides

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=150230

Using molecular beacons to probe molecular interactions between lactate dehydrogenase and single-stranded DNA.

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=150230

Using molecular beacons as a sensitive fluorescence assay for enzymatic cleavage of single-stranded DNA.

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=150230

Molecular beacons: a novel DNA probe for nucleic acid and protein studies

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=150230

Thermodynamic parameters for DNA sequences with dangling ends

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=150230

Screening unlabeled DNA targets with randomly ordered fiber-optic gene arrays

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=150230

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=150230

Multiplex detection of four pathogenic retroviruses using molecular beacons

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=150230

Thermodynamic basis of the enhanced specificity of structured DNA probes

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=150230

Thermodynamic parameters for an expanded nearest-neighbor model for formation of RNA duplexes with Watson-Crick base pairs

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=150230

Real time detection of DNA.RNA hybridization in living cells

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=150230

Kinetics of conformational fluctuations in DNA hairpin-loops

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=150230

Molecular beacons: probes that fluoresce upon hybridization

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=150230

Thermodynamics of internal C.T mismatches in DNA.

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=150230

Molecular beacon probes combined with amplification by NASBA enable homogeneous, real-time detection of RNA

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=150230

In situ visualization of messenger RNA for basic fibroblast growth factor in living cells

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=150230

A high throughput method to investigate oligodeoxyribonucleotide hybridization kinetics and thermodynamics

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=150230

A unified view of polymer, dumbbell, and oligonucleotide DNA nearest-neighbor thermodynamics

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=150230

Kinetic studies by fluorescence resonance energy transfer employing a double-labeled oligonucleotide: hybridization to the oligonucleotide complement and to single-stranded DNA.

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=150230

Specificity and stringency in DNA triplex formation

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=150230

A DNA damage signal is required for p53 to activate gadd45.

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=150230

Molecular beacons: a real-time polymerase chain reaction assay for detecting Salmonella

25 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=150230

Interaction of cyanine dyes with nucleic acids. XXI. Arguments for half-intercalation model of interaction

17 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=150230

Calculating nucleic acid secondary structure

20 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=150230

Oligonucleotides with fluorescent dyes at opposite ends provide a quenched probe system useful for detecting PCR product and nucleic acid hybridization

20 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=150230

Hybridization of Peptide Nucleic Acid†

20 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=150230

Thermodynamics and NMR of Internal G·T Mismatches in DNA

2 December 2018

1 reference

12 December 2020

Multicolor molecular beacons for allele discrimination

1 reference

12 December 2020

Nearest Neighbor Thermodynamic Parameters for Internal G·A Mismatches in DNA

1 reference

12 December 2020

Spectral genotyping of human alleles

1 reference

12 December 2020

Molecular beacon sequence analysis for detecting drug resistance in Mycobacterium tuberculosis

1 reference

12 December 2020

Nearest-neighbor thermodynamics of internal A.C mismatches in DNA: sequence dependence and pH effects

1 reference

12 December 2020

Multiplex detection of single-nucleotide variations using molecular beacons

1 reference

12 December 2020

Nearest-neighbor thermodynamics and NMR of DNA sequences with internal A.A, C.C, G.G, and T.T mismatches

1 reference

12 December 2020

Sequence dependent rigidity of single stranded DNA

1 reference

12 December 2020

In vivo imaging of proteolytic enzyme activity using a novel molecular reporter

1 reference

12 December 2020

Binding of symmetrical cyanine dyes into the DNA minor groove

1 reference

12 December 2020

Identifiers

DOI

10.1093/NAR/GKG212

1 reference

14 September 2017

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14 September 2017

PubMed publication ID

12582252

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