Coiled-Coil Design: Updated and Upgraded (Q39094574)

9 September 2017

title

Coiled-Coil Design: Updated and Upgraded (English)

1 reference

9 September 2017

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28101858%20AND%20SRC:MED&resulttype=core&format=json

10 June 2020

Derek N Woolfson

1 reference

9 September 2017

publication date

1 January 2017

1 reference

Sub-cellular biochemistry

9 September 2017

published in

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28101858%20AND%20SRC:MED&resulttype=core&format=json

10 June 2020

volume

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28101858%20AND%20SRC:MED&resulttype=core&format=json

10 June 2020

page(s)

35-61

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28101858%20AND%20SRC:MED&resulttype=core&format=json

Design of protein conformational switches

10 June 2020

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Installing hydrolytic activity into a completely de novo protein framework

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21 January 2018

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Helix to helix packing in proteins

21 January 2018

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The packing of α-helices: simple coiled-coils

21 January 2018

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Deriving Heterospecific Self-Assembling Protein-Protein Interactions Using a Computational Interactome Screen

21 January 2018

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Multistate approaches in computational protein design

21 January 2018

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An HMM model for coiled-coil domains and a comparison with PSSM-based predictions.

21 January 2018

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Heterotrimeric coiled coils with core residue urea side chains

21 January 2018

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Wza the translocon for E. coli capsular polysaccharides defines a new class of membrane protein

21 January 2018

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Self-assembly of alpha-helical coiled coil nanofibers.

21 January 2018

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Structural plasticity of helical nanotubes based on coiled-coil assemblies

21 January 2018

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Computational protein design of ligand binding and catalysis

21 January 2018

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https://api.crossref.org/works/10.1007%2F978-3-319-49674-0_2

A basis set of de novo coiled-coil peptide oligomers for rational protein design and synthetic biology

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2F978-3-319-49674-0_2

Self-assembling cages from coiled-coil peptide modules.

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2F978-3-319-49674-0_2

Predicting specificity in bZIP coiled-coil protein interactions

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2F978-3-319-49674-0_2

A hierarchic approach to the design of hexameric helical barrels

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2F978-3-319-49674-0_2

Buried polar residues and structural specificity in the GCN4 leucine zipper

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2F978-3-319-49674-0_2

Design of a single-chain polypeptide tetrahedron assembled from coiled-coil segments

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2F978-3-319-49674-0_2

Probing Designability via a Generalized Model of Helical Bundle Geometry

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2F978-3-319-49674-0_2

Computational Design of Virus-Like Protein Assemblies on Carbon Nanotube Surfaces

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2F978-3-319-49674-0_2

Historical review: another 50th anniversary--new periodicities in coiled coils

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2F978-3-319-49674-0_2

Design and characterization of a homodimeric antiparallel coiled coil

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2F978-3-319-49674-0_2

Preferred side-chain constellations at antiparallel coiled-coil interfaces

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2F978-3-319-49674-0_2

A switch between two-, three-, and four-stranded coiled coils in GCN4 leucine zipper mutants

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2F978-3-319-49674-0_2

Crystal structure of an isoleucine-zipper trimer

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2F978-3-319-49674-0_2

Repacking protein cores with backbone freedom: structure prediction for coiled coils

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2F978-3-319-49674-0_2

High-resolution protein design with backbone freedom

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2F978-3-319-49674-0_2

A coiled-coil motif that sequesters ions to the hydrophobic core

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2F978-3-319-49674-0_2

Coiled-coil assembly by peptides with non-heptad sequence motifs

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2F978-3-319-49674-0_2

Investigating the tolerance of coiled-coil peptides to nonheptad sequence inserts

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2F978-3-319-49674-0_2

The alpha-helix dipole and the properties of proteins

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2F978-3-319-49674-0_2

High thermodynamic stability of parametrically designed helical bundles

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2F978-3-319-49674-0_2

Engineered coiled-coil protein microfibers

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2F978-3-319-49674-0_2

De novo design of a transmembrane Zn²⁺-transporting four-helix bundle

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2F978-3-319-49674-0_2

Increasing the affinity of selective bZIP-binding peptides through surface residue redesign.

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2F978-3-319-49674-0_2

Computational Design of Self-Assembling Protein Nanomaterials with Atomic Level Accuracy

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2F978-3-319-49674-0_2

Accurate design of co-assembling multi-component protein nanomaterials

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2F978-3-319-49674-0_2

TOPOFOLD, the designed modular biomolecular folds: polypeptide-based molecular origami nanostructures following the footsteps of DNA.

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2F978-3-319-49674-0_2

Temporal Control of Membrane Fusion through Photolabile PEGylation of Liposome Membranes

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2F978-3-319-49674-0_2

Crystal structure of the bacterial membrane protein TolC central to multidrug efflux and protein export

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2F978-3-319-49674-0_2

Designing heterodimeric two-stranded alpha-helical coiled-coils. Effects of hydrophobicity and alpha-helical propensity on protein folding, stability, and specificity

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2F978-3-319-49674-0_2

A seven-helix coiled coil

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2F978-3-319-49674-0_2

Conformational transition between four and five-stranded phenylalanine zippers determined by a local packing interaction

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2F978-3-319-49674-0_2

Crystal structure of a synthetic triple-stranded alpha-helical bundle

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2F978-3-319-49674-0_2

Prediction and analysis of coiled-coil structures

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2F978-3-319-49674-0_2

The structure of alpha-helical coiled coils

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2F978-3-319-49674-0_2

Predicting coiled coils from protein sequences

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2F978-3-319-49674-0_2

Protein stability: computation, sequence statistics, and new experimental methods

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2F978-3-319-49674-0_2

The crystal structure of a five-stranded coiled coil in COMP: a prototype ion channel?

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2F978-3-319-49674-0_2

A reduced SNARE model for membrane fusion.

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2F978-3-319-49674-0_2

Model systems for membrane fusion.

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2F978-3-319-49674-0_2

Design and characterization of a heterodimeric coiled coil that forms exclusively with an antiparallel relative helix orientation

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2F978-3-319-49674-0_2

Paircoil2: improved prediction of coiled coils from sequence.

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2F978-3-319-49674-0_2

De novo protein design as a methodology for synthetic bioinorganic chemistry

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2F978-3-319-49674-0_2

Designed heterodimerizing leucine zippers with a ranger of pIs and stabilities up to 10(-15) M

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2F978-3-319-49674-0_2

Targeted anion transporter delivery by coiled-coil driven membrane fusion.

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2F978-3-319-49674-0_2

A periodic table of coiled-coil protein structures.

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2F978-3-319-49674-0_2

Crystal structure of a designed, thermostable, heterotrimeric coiled coil

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2F978-3-319-49674-0_2

A designed heterotrimeric coiled coil

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2F978-3-319-49674-0_2

Multistate protein design using CLEVER and CLASSY.

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2F978-3-319-49674-0_2

A set of computationally designed orthogonal antiparallel homodimers that expands the synthetic coiled-coil toolkit.

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2F978-3-319-49674-0_2

Computational design of protein self-assembly

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2F978-3-319-49674-0_2

The design of antiparallel coiled coils

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2F978-3-319-49674-0_2

Computer modelling of the alpha-helical coiled coil: packing of side-chains in the inner core

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2F978-3-319-49674-0_2

Generalized Crick equations for modeling noncanonical coiled coils.

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2F978-3-319-49674-0_2

The crystal structure of the designed trimeric coiled coil coil-VaLd: implications for engineering crystals and supramolecular assemblies

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2F978-3-319-49674-0_2

The Native GCN4 Leucine-Zipper Domain Does Not Uniquely Specify a Dimeric Oligomerization State

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2F978-3-319-49674-0_2

X-ray structure of the GCN4 leucine zipper, a two-stranded, parallel coiled coil

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2F978-3-319-49674-0_2

Peptide 'Velcro': design of a heterodimeric coiled coil.

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2F978-3-319-49674-0_2

Nanohedra: using symmetry to design self assembling protein cages, layers, crystals, and filaments

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2F978-3-319-49674-0_2

Following polypeptide folding and assembly with conformational switches

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2F978-3-319-49674-0_2

Sequence and structural duality: designing peptides to adopt two stable conformations.

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2F978-3-319-49674-0_2

Characterization of a highly flexible self-assembling protein system designed to form nanocages

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2F978-3-319-49674-0_2

A structural basis for Mg2+ homeostasis and the CorA translocation cycle

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2F978-3-319-49674-0_2

Structural test of the parameterized-backbone method for protein design.

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2F978-3-319-49674-0_2

Data-driven prediction and design of bZIP coiled-coil interactions

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2F978-3-319-49674-0_2

A silk purse from a sow's ear-bioinspired materials based on α-helical coiled coils

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2F978-3-319-49674-0_2

The evolution and structure prediction of coiled coils across all genomes

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2F978-3-319-49674-0_2

Protein design: Past, present, and future

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2F978-3-319-49674-0_2

A Synthetic Coiled-Coil Interactome Provides Heterospecific Modules for Molecular Engineering

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2F978-3-319-49674-0_2

Design of a heterotetrameric coiled coil

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2F978-3-319-49674-0_2

The RCSB Protein Data Bank: views of structural biology for basic and applied research and education

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2F978-3-319-49674-0_2

Structural plasticity of the coiled-coil domain of rotavirus NSP4.

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2F978-3-319-49674-0_2

Peptide tic-tac-toe: heterotrimeric coiled-coil specificity from steric matching of multiple hydrophobic side chains

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2F978-3-319-49674-0_2

Resolving single membrane fusion events on planar pore-spanning membranes

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2F978-3-319-49674-0_2

Cryo-transmission electron microscopy structure of a gigadalton peptide fiber of de novo design.

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2F978-3-319-49674-0_2

Constructing arrays of proteins

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2F978-3-319-49674-0_2

Generation of protein lattices by fusing proteins with matching rotational symmetry

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2F978-3-319-49674-0_2

De Novo Design of Xeno-Metallo Coiled Coils

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2F978-3-319-49674-0_2

The d'--d--d' vertical triad is less discriminating than the a'--a--a' vertical triad in the antiparallel coiled-coil dimer motif.

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2F978-3-319-49674-0_2

Strong contributions from vertical triads to helix-partner preferences in parallel coiled coils.

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2F978-3-319-49674-0_2

Analysis of alpha-helical coiled coils with the program TWISTER reveals a structural mechanism for stutter compensation.

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2F978-3-319-49674-0_2

Icosahedral bacteriophage ΦX174 forms a tail for DNA transport during infection

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2F978-3-319-49674-0_2

Coiled-coil length: Size does matter.

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2F978-3-319-49674-0_2

Molecular properties of two proteins homologous to PduO-type ATP:cob(I)alamin adenosyltransferase from Sulfolobus tokodaii

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2F978-3-319-49674-0_2

Probing the "dark matter" of protein fold space.

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2F978-3-319-49674-0_2

Artificial metalloenzymes derived from three-helix bundles

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2F978-3-319-49674-0_2

CC+: a relational database of coiled-coil structures.

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2F978-3-319-49674-0_2

Controlling the Assembly of Coiled-Coil Peptide Nanotubes.

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2F978-3-319-49674-0_2

SYNZIP protein interaction toolbox: in vitro and in vivo specifications of heterospecific coiled-coil interaction domains

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2F978-3-319-49674-0_2

Computational design of water-soluble α-helical barrels

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2F978-3-319-49674-0_2

Multicoil2: predicting coiled coils and their oligomerization states from sequence in the twilight zone.

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2F978-3-319-49674-0_2

Coiled-coil driven membrane fusion: zipper-like vs. non-zipper-like peptide orientation

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2F978-3-319-49674-0_2

In situ modification of plain liposomes with lipidated coiled coil forming peptides induces membrane fusion.

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2F978-3-319-49674-0_2

LOGICOIL--multi-state prediction of coiled-coil oligomeric state

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2F978-3-319-49674-0_2

Structural Dynamics and Topology of Phosphorylated Phospholamban Homopentamer Reveal Its Role in the Regulation of Calcium Transport

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2F978-3-319-49674-0_2

Systems chemistry: logic gates, arithmetic units, and network motifs in small networks

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2F978-3-319-49674-0_2

Open-and-shut cases in coiled-coil assembly: alpha-sheets and alpha-cylinders

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2F978-3-319-49674-0_2

Socket: a program for identifying and analysing coiled-coil motifs within protein structures.

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2F978-3-319-49674-0_2

Extended knobs-into-holes packing in classical and complex coiled-coil assemblies.

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2F978-3-319-49674-0_2

Principles of helix-helix packing in proteins: the helical lattice superposition model.

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2F978-3-319-49674-0_2

CCBuilder: an interactive web-based tool for building, designing and assessing coiled-coil protein assemblies.

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2F978-3-319-49674-0_2

The design of coiled-coil structures and assemblies

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2F978-3-319-49674-0_2

Predicting oligomerization states of coiled coils

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2F978-3-319-49674-0_2

More than just bare scaffolds: towards multi-component and decorated fibrous biomaterials.

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2F978-3-319-49674-0_2

New currency for old rope: from coiled-coil assemblies to α-helical barrels.

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2F978-3-319-49674-0_2

De novo protein design: how do we expand into the universe of possible protein structures?

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2F978-3-319-49674-0_2

Designed Coiled Coils Promote Folding of a Recombinant Bacterial Collagen

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2F978-3-319-49674-0_2

A de novo peptide hexamer with a mutable channel

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2F978-3-319-49674-0_2

Squaring the Circle in Peptide Assembly: From Fibers to Discrete Nanostructures by de Novo Design

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2F978-3-319-49674-0_2

Rational Design of Helical Nanotubes from Self-Assembly of Coiled-Coil Lock Washers

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2F978-3-319-49674-0_2

Local and macroscopic electrostatic interactions in single α-helices.

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2F978-3-319-49674-0_2

The Fourier transform of a coiled-coil

31 March 2020

1 reference

https://api.crossref.org/works/10.1007%2F978-3-319-49674-0_2

Crystal structure of a divalent metal ion transporter CorA at 2.9 angstrom resolution

31 March 2020

1 reference

https://api.crossref.org/works/10.1007%2F978-3-319-49674-0_2

Design of heterotetrameric coiled coils: evidence for increased stabilization by Glu(-)-Lys(+) ion pair interactions

31 March 2020

1 reference

https://api.crossref.org/works/10.1007%2F978-3-319-49674-0_2

De novo design of orthogonal peptide pairs forming parallel coiled-coil heterodimers

31 March 2020

1 reference

https://api.crossref.org/works/10.1007%2F978-3-319-49674-0_2

An antiparallel alpha-helical coiled-coil model system for rapid assessment of side-chain recognition at the hydrophobic interface

31 March 2020

1 reference

https://api.crossref.org/works/10.1007%2F978-3-319-49674-0_2

Selective formation of AAB- and ABC-type heterotrimeric alpha-helical coiled coils

31 March 2020

1 reference

https://api.crossref.org/works/10.1007%2F978-3-319-49674-0_2

A buried polar interaction imparts structural uniqueness in a designed heterodimeric coiled coil

31 March 2020

1 reference

https://api.crossref.org/works/10.1007%2F978-3-319-49674-0_2

Electrostatic interactions control the parallel and antiparallel orientation of alpha-helical chains in two-stranded alpha-helical coiled-coils

31 March 2020

1 reference

https://api.crossref.org/works/10.1007%2F978-3-319-49674-0_2

Design and characterization of an intramolecular antiparallel coiled coil peptide

31 March 2020

1 reference

https://api.crossref.org/works/10.1007%2F978-3-319-49674-0_2

Exploring alternate states and oligomerization preferences of coiled-coils by de novo structure modeling

31 March 2020

1 reference

https://api.crossref.org/works/10.1007%2F978-3-319-49674-0_2

A set of de novo designed parallel heterodimeric coiled coils with quantified dissociation constants in the micromolar to sub-nanomolar regime

31 March 2020

1 reference

https://api.crossref.org/works/10.1007%2F978-3-319-49674-0_2

Controlling the rate of coiled coil driven membrane fusion

31 March 2020

1 reference

https://api.crossref.org/works/10.1007%2F978-3-319-49674-0_2

10.1007/978-3-319-49674-0_2

31 March 2020

Identifiers

DOI

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28101858%20AND%20SRC:MED&resulttype=core&format=json

10 June 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28101858%20AND%20SRC:MED&resulttype=core&format=json