Translational repression of the Drosophila nanos mRNA involves the RNA helicase Belle and RNA coating by Me31B and Trailer hitch. (Q38682029)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28701521%20AND%20SRC:MED&resulttype=core&format=json

25 March 2020

title

Translational repression of the Drosophila nanos mRNA involves the RNA helicase Belle and RNA coating by Me31B and Trailer hitch (English)

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25 March 2020

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25 March 2020

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25 March 2020

Michael Götze

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25 March 2020

Christian Ihling

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25 March 2020

Christiane Rammelt

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25 March 2020

Nagraj Sambrani

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25 March 2020

Claudia Temme

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25 March 2020

Andrea Sinz

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25 March 2020

Martine Simonelig

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25 March 2020

Stephanie Pierson

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25 March 2020

language of work or name

English

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publication date

12 July 2017

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25 March 2020

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25 March 2020

volume

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issue

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25 March 2020

page(s)

1552-1568

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describes a project that uses

25 March 2020

ImageJ

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11 June 2022

https://www.ebi.ac.uk/europepmc/webservices/rest/PMC5602113/fullTextXML

based on heuristic

inferred from PubMed Central ID database lookup

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ATP is dispensable for both miRNA- and Smaug-mediated deadenylation reactions

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The DDX6-4E-T interaction mediates translational repression and P-body assembly

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miRISC and the CCR4-NOT complex silence mRNA targets independently of 43S ribosomal scanning

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Oligoadenylation of 3' decay intermediates promotes cytoplasmic mRNA degradation in Drosophila cells

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Structure of a Human 4E-T/DDX6/CNOT1 Complex Reveals the Different Interplay of DDX6-Binding Proteins with the CCR4-NOT Complex

16 September 2018

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Transcriptional Activation of the Zygotic Genome in Drosophila

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Regulation and Function of Maternal Gene Products During the Maternal-to-Zygotic Transition in Drosophila

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Aubergine iCLIP Reveals piRNA-Dependent Decay of mRNAs Involved in Germ Cell Development in the Early Embryo

16 September 2018

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Drosophila germ granules are structured and contain homotypic mRNA clusters

16 September 2018

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Comprehensive Protein Interactome Analysis of a Key RNA Helicase: Detection of Novel Stress Granule Proteins

16 September 2018

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The eIF4E-Binding Protein 4E-T Is a Component of the mRNA Decay Machinery that Bridges the 5' and 3' Termini of Target mRNAs

16 September 2018

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Xenopus CAF1 requires NOT1-mediated interaction with 4E-T to repress translation in vivo

16 September 2018

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P-body assembly requires DDX6 repression complexes rather than decay or Ataxin2/2L complexes

16 September 2018

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Independent and coordinate trafficking of single Drosophila germ plasm mRNAs

16 September 2018

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Mitochondrial dysfunction reveals the role of mRNA poly(A) tail regulation in oculopharyngeal muscular dystrophy pathogenesis

16 September 2018

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Automated assignment of MS/MS cleavable cross-links in protein 3D-structure analysis

16 September 2018

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The Ded1/DDX3 subfamily of DEAD-box RNA helicases

16 September 2018

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Human DDX6 effects miRNA-mediated gene silencing via direct binding to CNOT1.

16 September 2018

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A DDX6-CNOT1 complex and W-binding pockets in CNOT9 reveal direct links between miRNA target recognition and silencing

16 September 2018

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Structural and biochemical insights to the role of the CCR4-NOT complex and DDX6 ATPase in microRNA repression

16 September 2018

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Analysis options for high-throughput sequencing in miRNA expression profiling

16 September 2018

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Global regulation of mRNA translation and stability in the early Drosophila embryo by the Smaug RNA-binding protein

16 September 2018

1 reference

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DEAD-box helicases form nucleotide-dependent, long-lived complexes with RNA.

16 September 2018

1 reference

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The role of disordered protein regions in the assembly of decapping complexes and RNP granules

16 September 2018

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Human 4E-T represses translation of bound mRNAs and enhances microRNA-mediated silencing

16 September 2018

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Translation repressors, an RNA helicase, and developmental cues control RNP phase transitions during early development.

16 September 2018

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Molecular phylogeny of a RING E3 ubiquitin ligase, conserved in eukaryotic cells and dominated by homologous components, the muskelin/RanBPM/CTLH complex

16 September 2018

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Structural analysis of the yeast Dhh1-Pat1 complex reveals how Dhh1 engages Pat1, Edc3 and RNA in mutually exclusive interactions

16 September 2018

1 reference

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The role of the DEAD-box RNA helicase DDX3 in mRNA metabolism

16 September 2018

1 reference

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An essential role for zygotic expression in the pre-cellular Drosophila embryo.

16 September 2018

1 reference

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Control of maternal mRNA stability in germ cells and early embryos

16 September 2018

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Translational control by the DEAD Box RNA helicase belle regulates ecdysone-triggered transcriptional cascades

16 September 2018

1 reference

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microRNA-independent recruitment of Argonaute 1 to nanos mRNA through the Smaug RNA-binding protein

16 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5602113

Multiple binding of repressed mRNAs by the P-body protein Rck/p54.

16 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5602113

Crystal structure of a minimal eIF4E-Cup complex reveals a general mechanism of eIF4E regulation in translational repression

16 September 2018

1 reference

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miRNA repression involves GW182-mediated recruitment of CCR4-NOT through conserved W-containing motifs

16 September 2018

1 reference

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GW182 proteins directly recruit cytoplasmic deadenylase complexes to miRNA targets

16 September 2018

1 reference

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Posttranscriptional regulation in Drosophila oocytes and early embryos

16 September 2018

1 reference

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CUP promotes deadenylation and inhibits decapping of mRNA targets.

16 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5602113

Patterning of the Drosophila oocyte by a sequential translation repression program involving the d4EHP and Belle translational repressors

16 September 2018

1 reference

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Diauxic shift-dependent relocalization of decapping activators Dhh1 and Pat1 to polysomal complexes

16 September 2018

1 reference

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Intermolecular Interactions within the Abundant DEAD-box Protein Dhh1 Regulate Its Activity in Vivo

16 September 2018

1 reference

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Smaug assembles an ATP-dependent stable complex repressing nanos mRNA translation at multiple levels.

16 September 2018

1 reference

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Maternal mRNA deadenylation and decay by the piRNA pathway in the early Drosophila embryo

16 September 2018

1 reference

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Decapping activators in Saccharomyces cerevisiae act by multiple mechanisms.

16 September 2018

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Cleavable cross-linker for protein structure analysis: reliable identification of cross-linking products by tandem MS.

16 September 2018

1 reference

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Translational repression by deadenylases

16 September 2018

1 reference

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HPat provides a link between deadenylation and decapping in metazoa

16 September 2018

1 reference

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The SXL-UNR corepressor complex uses a PABP-mediated mechanism to inhibit ribosome recruitment to msl-2 mRNA.

16 September 2018

1 reference

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In vivo stable isotope labeling of fruit flies reveals post-transcriptional regulation in the maternal-to-zygotic transition

16 September 2018

1 reference

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Structural basis for the mutually exclusive anchoring of P body components EDC3 and Tral to the DEAD box protein DDX6/Me31B

16 September 2018

1 reference

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An essential role for the RNA-binding protein Smaug during the Drosophila maternal-to-zygotic transition

16 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5602113

Drosophila PTB promotes formation of high-order RNP particles and represses oskar translation

16 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5602113

Cell-free deadenylation assays with Drosophila embryo extracts

16 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5602113

Mechanism of ATP turnover inhibition in the EJC

16 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5602113

MaxQuant enables high peptide identification rates, individualized p.p.b.-range mass accuracies and proteome-wide protein quantification

16 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5602113

16 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5602113

The yeast GID complex, a novel ubiquitin ligase (E3) involved in the regulation of carbohydrate metabolism

16 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5602113

The DEAD-box RNA helicase Ded1p affects and accumulates in Saccharomyces cerevisiae P-bodies

16 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5602113

CPEB interacts with an ovary-specific eIF4E and 4E-T in early Xenopus oocytes.

16 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5602113

In-gel digestion for mass spectrometric characterization of proteins and proteomes

16 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5602113

Discrete small RNA-generating loci as master regulators of transposon activity in Drosophila

16 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5602113

SMAUG is a major regulator of maternal mRNA destabilization in Drosophila and its translation is activated by the PAN GU kinase.

16 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5602113

The carnegie protein trap library: a versatile tool for Drosophila developmental studies

16 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5602113

RAP55, a cytoplasmic mRNP component, represses translation in Xenopus oocytes

16 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5602113

Oskar allows nanos mRNA translation in Drosophila embryos by preventing its deadenylation by Smaug/CCR4.

16 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5602113

Rapid ATP-dependent deadenylation of nanos mRNA in a cell-free system from Drosophila embryos

16 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5602113

16 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5602113

Bruno acts as a dual repressor of oskar translation, promoting mRNA oligomerization and formation of silencing particles

16 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5602113

Efficient protein trafficking requires trailer hitch, a component of a ribonucleoprotein complex localized to the ER in Drosophila

16 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5602113

A complex containing the Sm protein CAR-1 and the RNA helicase CGH-1 is required for embryonic cytokinesis in Caenorhabditis elegans

16 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5602113

A conserved RNA-protein complex component involved in physiological germline apoptosis regulation in C. elegans

16 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5602113

An essential cytoplasmic function for the nuclear poly(A) binding protein, PABP2, in poly(A) tail length control and early development in Drosophila

16 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5602113

General translational repression by activators of mRNA decapping

16 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5602113

The exon junction core complex is locked onto RNA by inhibition of eIF4AIII ATPase activity

16 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5602113

Functional analysis of seven genes encoding eight translation initiation factor 4E (eIF4E) isoforms in Drosophila

16 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5602113

Mechanisms of translational regulation in Drosophila

16 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5602113

Smaug recruits the CCR4/POP2/NOT deadenylase complex to trigger maternal transcript localization in the early Drosophila embryo

16 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5602113

Belle is a Drosophila DEAD-box protein required for viability and in the germ line

16 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5602113

Cup is a nucleocytoplasmic shuttling protein that interacts with the eukaryotic translation initiation factor 4E to modulate Drosophila ovary development.

16 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5602113

A complex containing the CCR4 and CAF1 proteins is involved in mRNA deadenylation in Drosophila

16 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5602113

The active form of Xp54 RNA helicase in translational repression is an RNA-mediated oligomer

16 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5602113

Drosophila cup is an eIF4E binding protein that associates with Bruno and regulates oskar mRNA translation in oogenesis

16 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5602113

Cup is an eIF4E binding protein required for both the translational repression of oskar and the recruitment of Barentsz

16 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5602113

Drosophila Cup is an eIF4E-binding protein that functions in Smaug-mediated translational repression

16 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5602113

Functional conservation of Dhh1p, a cytoplasmic DExD/H-box protein present in large complexes

16 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5602113

A conserved role of a DEAD box helicase in mRNA masking

16 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5602113

Me31B silences translation of oocyte-localizing RNAs through the formation of cytoplasmic RNP complex during Drosophila oogenesis.

16 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5602113

Nanos interacts with cup in the female germline of Drosophila.

16 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5602113

Isolation of a ribonucleoprotein complex involved in mRNA localization in Drosophila oocytes

16 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5602113

Smaug, a novel and conserved protein, contributes to repression of nanos mRNA translation in vitro

16 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5602113

Smaug, a novel RNA-binding protein that operates a translational switch in Drosophila

16 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5602113

Joint action of two RNA degradation pathways controls the timing of maternal transcript elimination at the midblastula transition in Drosophila melanogaster

16 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5602113

Role for mRNA localization in translational activation but not spatial restriction of nanos RNA.

16 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5602113

A newly identified N-terminal amino acid sequence of human eIF4G binds poly(A)-binding protein and functions in poly(A)-dependent translation

16 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5602113

A genetic pathway for regulation of tra-2 translation.

16 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5602113

The Nanos gradient in Drosophila embryos is generated by translational regulation.

16 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5602113

smaug protein represses translation of unlocalized nanos mRNA in the Drosophila embryo

16 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5602113

Storage of messenger RNA in eukaryotes: envelopment with protein, translational barrier at 5' side, or conformational masking by 3' side?

16 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5602113

A Comparison of the Binding of Coomassie Brilliant Blue to Proteins at Low and Neutral pH

16 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5602113

Translational regulation of nanos by RNA localization

16 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5602113

Complexity of RNA in eggs of Drosophila melanogaster and Musca domestica

16 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5602113

16 September 2018

"Masked" forms of mRNA

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5602113

Nanos is the localized posterior determinant in Drosophila

16 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5602113

Induction of germ cell formation by oskar.

16 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5602113

Overexpression of oskar directs ectopic activation of nanos and presumptive pole cell formation in Drosophila embryos

16 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5602113

16 September 2018

Identifiers

DOI

10.1261/RNA.062208.117

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28701521%20AND%20SRC:MED&resulttype=core&format=json

25 March 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28701521%20AND%20SRC:MED&resulttype=core&format=json

25 March 2020

PubMed publication ID

28701521

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28701521%20AND%20SRC:MED&resulttype=core&format=json