Clinical value of whole-genome sequencing of Mycobacterium tuberculosis (Q38567338)

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7 January 2021

Mycobacterium tuberculosis evolutionary pathogenesis and its putative impact on drug development

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7 January 2021

Pre-Columbian mycobacterial genomes reveal seals as a source of New World human tuberculosis

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7 January 2021

Evolution of drug resistance in tuberculosis: recent progress and implications for diagnosis and therapy

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7 January 2021

Diversity and evolution of Mycobacterium tuberculosis: moving to whole-genome-based approaches

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7 January 2021

Comparative genomics of mycobacteria: some answers, yet more new questions

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7 January 2021

Diversity and disease pathogenesis in Mycobacterium tuberculosis

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7 January 2021

Translating genomics research into control of tuberculosis: lessons learned and future prospects

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7 January 2021

Whole genome sequencing: a new paradigm in the surveillance and control of human tuberculosis

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7 January 2021

Evolutionary history of tuberculosis shaped by conserved mutations in the PhoPR virulence regulator

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7 January 2021

A microbiological revolution meets an ancient disease: improving the management of tuberculosis with genomics

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7 January 2021

Rate of reinfection tuberculosis after successful treatment is higher than rate of new tuberculosis

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7 January 2021

The temporal dynamics of relapse and reinfection tuberculosis after successful treatment: a retrospective cohort study

1 reference

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7 January 2021

Whole-genome sequencing to establish relapse or re-infection with Mycobacterium tuberculosis: a retrospective observational study

1 reference

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7 January 2021

Recurrence due to relapse or reinfection with Mycobacterium tuberculosis: a whole-genome sequencing approach in a large, population-based cohort with a high HIV infection prevalence and active follow-up

1 reference

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7 January 2021

Molecular methods for tuberculosis trials: time for whole-genome sequencing?

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7 January 2021

Public perceptions of bacterial whole-genome sequencing for tuberculosis

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7 January 2021

Restriction fragment length polymorphism analysis using IS6110 as an epidemiological marker in tuberculosis

1 reference

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7 January 2021

Automated high-throughput genotyping for study of global epidemiology of Mycobacterium tuberculosis based on mycobacterial interspersed repetitive units

1 reference

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7 January 2021

Current methods in the molecular typing of Mycobacterium tuberculosis and other mycobacteria.

1 reference

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7 January 2021

Reemergence and amplification of tuberculosis in the Canadian arctic

1 reference

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7 January 2021

Marked microevolution of a unique Mycobacterium tuberculosis strain in 17 years of ongoing transmission in a high risk population

1 reference

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7 January 2021

Whole-genome sequencing to detect recent transmission of Mycobacterium tuberculosis in settings with a high burden of tuberculosis

1 reference

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7 January 2021

Whole-genome sequencing of the Mycobacterium tuberculosis Manila sublineage results in less clustering and better resolution than mycobacterial interspersed repetitive-unit-variable-number tandem-repeat (MIRU-VNTR) typing and spoligotyping

1 reference

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7 January 2021

Whole genome sequencing versus traditional genotyping for investigation of a Mycobacterium tuberculosis outbreak: a longitudinal molecular epidemiological study

1 reference

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7 January 2021

SpolPred: rapid and accurate prediction of Mycobacterium tuberculosis spoligotypes from short genomic sequences

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7 January 2021

Next generation sequencing technology: Advances and applications.

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7 January 2021

The mutation rate of mycobacterial repetitive unit loci in strains of M. tuberculosis from cynomolgus macaque infection

1 reference

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7 January 2021

Deciphering the biology of Mycobacterium tuberculosis from the complete genome sequence

1 reference

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7 January 2021

Comparative analysis of Mycobacterium tuberculosis pe and ppe genes reveals high sequence variation and an apparent absence of selective constraints

1 reference

https://api.crossref.org/works/10.1016%2FS1473-3099%2815%2900071-7

7 January 2021

High-resolution typing by integration of genome sequencing data in a large tuberculosis cluster

1 reference

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7 January 2021

DNA sequencing with chain-terminating inhibitors

1 reference

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7 January 2021

Whole-genome sequencing and social-network analysis of a tuberculosis outbreak

1 reference

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7 January 2021

Tracking a tuberculosis outbreak over 21 years: strain-specific single-nucleotide polymorphism typing combined with targeted whole-genome sequencing

1 reference

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7 January 2021

Whole-genome sequencing to delineate Mycobacterium tuberculosis outbreaks: a retrospective observational study

1 reference

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7 January 2021

Whole genome sequencing analysis of intrapatient microevolution in Mycobacterium tuberculosis: potential impact on the inference of tuberculosis transmission.

1 reference

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7 January 2021

Assessment of Mycobacterium tuberculosis transmission in Oxfordshire, UK, 2007-12, with whole pathogen genome sequences: an observational study

1 reference

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7 January 2021

Whole Genome Sequencing Shows a Low Proportion of Tuberculosis Disease Is Attributable to Known Close Contacts in Rural Malawi

1 reference

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7 January 2021

Inferring patient to patient transmission of Mycobacterium tuberculosis from whole genome sequencing data

1 reference

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7 January 2021

Comparison of methods based on different molecular epidemiological markers for typing of Mycobacterium tuberculosis complex strains: interlaboratory study of discriminatory power and reproducibility.

1 reference

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7 January 2021

SITVITWEB--a publicly available international multimarker database for studying Mycobacterium tuberculosis genetic diversity and molecular epidemiology

1 reference

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7 January 2021

Spoligotype database of Mycobacterium tuberculosis: biogeographic distribution of shared types and epidemiologic and phylogenetic perspectives

1 reference

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7 January 2021

Proposal for standardization of optimized mycobacterial interspersed repetitive unit-variable-number tandem repeat typing of Mycobacterium tuberculosis

1 reference

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7 January 2021

MIRU-VNTRplus: a web tool for polyphasic genotyping of Mycobacterium tuberculosis complex bacteria

1 reference

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7 January 2021

Out-of-Africa migration and Neolithic coexpansion of Mycobacterium tuberculosis with modern humans

1 reference

https://api.crossref.org/works/10.1016%2FS1473-3099%2815%2900071-7

7 January 2021

Significance of the identification in the Horn of Africa of an exceptionally deep branching Mycobacterium tuberculosis clade

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7 January 2021

Automated ensemble assembly and validation of microbial genomes

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7 January 2021

Whole-genome sequencing in bacteriology: state of the art.

1 reference

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7 January 2021

BIGSdb: Scalable analysis of bacterial genome variation at the population level.

1 reference

https://api.crossref.org/works/10.1016%2FS1473-3099%2815%2900071-7

7 January 2021

Pathogen typing in the genomics era: MLST and the future of molecular epidemiology

1 reference

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7 January 2021

Silent nucleotide polymorphisms and a phylogeny for Mycobacterium tuberculosis

1 reference

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7 January 2021

Whole-genome-based Mycobacterium tuberculosis surveillance: a standardized, portable, and expandable approach.

1 reference

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7 January 2021

Large-scale whole genome sequencing of M. tuberculosis provides insights into transmission in a high prevalence area

1 reference

https://api.crossref.org/works/10.1016%2FS1473-3099%2815%2900071-7

7 January 2021

Use of whole genome sequencing to estimate the mutation rate of Mycobacterium tuberculosis during latent infection

1 reference

https://api.crossref.org/works/10.1016%2FS1473-3099%2815%2900071-7

7 January 2021

Whole genome sequencing of Mycobacterium tuberculosis reveals slow growth and low mutation rates during latent infections in humans

1 reference

https://api.crossref.org/works/10.1016%2FS1473-3099%2815%2900071-7

7 January 2021

Drug-susceptible Mycobacterium tuberculosis Beijing genotype does not develop mutation-conferred resistance to rifampin at an elevated rate

1 reference

https://api.crossref.org/works/10.1016%2FS1473-3099%2815%2900071-7

7 January 2021

Mycobacterium tuberculosis mutation rate estimates from different lineages predict substantial differences in the emergence of drug-resistant tuberculosis

1 reference

https://api.crossref.org/works/10.1016%2FS1473-3099%2815%2900071-7

7 January 2021

Evolution and transmission of drug-resistant tuberculosis in a Russian population

1 reference

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7 January 2021

Long-term outcomes of patients with extensively drug-resistant tuberculosis in South Africa: a cohort study

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https://api.crossref.org/works/10.1016%2FS1473-3099%2815%2900071-7

7 January 2021

Transforming clinical microbiology with bacterial genome sequencing.

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7 January 2021

Mutation rate and the emergence of drug resistance in Mycobacterium tuberculosis.

1 reference

https://api.crossref.org/works/10.1016%2FS1473-3099%2815%2900071-7

7 January 2021

DNA replication fidelity in Mycobacterium tuberculosis is mediated by an ancestral prokaryotic proofreader.

1 reference

https://api.crossref.org/works/10.1016%2FS1473-3099%2815%2900071-7

7 January 2021

Tuberculosis in seals caused by a novel member of the Mycobacterium tuberculosis complex: Mycobacterium pinnipedii sp. nov

1 reference

https://api.crossref.org/works/10.1016%2FS1473-3099%2815%2900071-7

7 January 2021

Novel Mycobacterium tuberculosis complex pathogen, M. mungi

1 reference

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7 January 2021

Genomic interrogation of the dassie bacillus reveals it as a unique RD1 mutant within the Mycobacterium tuberculosis complex

1 reference

https://api.crossref.org/works/10.1016%2FS1473-3099%2815%2900071-7

7 January 2021

Novel cause of tuberculosis in meerkats, South Africa

1 reference

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7 January 2021

Novel Mycobacterium tuberculosis complex isolate from a wild chimpanzee

1 reference

https://api.crossref.org/works/10.1016%2FS1473-3099%2815%2900071-7

7 January 2021

Characterization of Mycobacterium orygis as M. tuberculosis complex subspecies

1 reference

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7 January 2021

A new evolutionary scenario for the Mycobacterium tuberculosis complex

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7 January 2021

Mycobacterium canettii, the smooth variant of M. tuberculosis, isolated from a Swiss patient exposed in Africa

1 reference

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7 January 2021

A Novel Pathogenic Taxon of the Mycobacterium tuberculosis Complex, Canetti: Characterization of an Exceptional Isolate from Africa

1 reference

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7 January 2021

Genomic analysis of smooth tubercle bacilli provides insights into ancestry and pathoadaptation of Mycobacterium tuberculosis

1 reference

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7 January 2021

MLVA based classification of Mycobacterium tuberculosis complex lineages for a robust phylogeographic snapshot of its worldwide molecular diversity

1 reference

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7 January 2021

Mycobacterium tuberculosis complex CRISPR genotyping: improving efficiency, throughput and discriminative power of 'spoligotyping' with new spacers and a microbead-based hybridization assay.

1 reference

https://api.crossref.org/works/10.1016%2FS1473-3099%2815%2900071-7

7 January 2021

Co-evolution of Mycobacterium tuberculosis and Homo sapiens

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https://api.crossref.org/works/10.1016%2FS1473-3099%2815%2900071-7

7 January 2021

Mycobacterial Pathogenomics and Evolution

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7 January 2021

Mycobacterial lineages causing pulmonary and extrapulmonary tuberculosis, Ethiopia.

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7 January 2021

Consequences of genomic diversity in Mycobacterium tuberculosis

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7 January 2021

Evolutionary history and global spread of the Mycobacterium tuberculosis Beijing lineage

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7 January 2021

A recently evolved sublineage of the Mycobacterium tuberculosis Beijing strain family is associated with an increased ability to spread and cause disease

1 reference

https://api.crossref.org/works/10.1016%2FS1473-3099%2815%2900071-7

7 January 2021

Mycobacterium tuberculosis strains of the modern sublineage of the Beijing family are more likely to display increased virulence than strains of the ancient sublineage

1 reference

https://api.crossref.org/works/10.1016%2FS1473-3099%2815%2900071-7

7 January 2021

Low induction of proinflammatory cytokines parallels evolutionary success of modern strains within the Mycobacterium tuberculosis Beijing genotype

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https://api.crossref.org/works/10.1016%2FS1473-3099%2815%2900071-7

7 January 2021

The pattern of cytokine production in vitro induced by ancient and modern Beijing Mycobacterium tuberculosis strains.

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7 January 2021

Southern East Asian origin and coexpansion of Mycobacterium tuberculosis Beijing family with Han Chinese

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7 January 2021

Insights into the origin, emergence, and current spread of a successful Russian clone of Mycobacterium tuberculosis

1 reference

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7 January 2021

VapC toxins from Mycobacterium tuberculosis are ribonucleases that differentially inhibit growth and are neutralized by cognate VapB antitoxins

1 reference

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7 January 2021

Mutation in mce operons attenuates Mycobacterium tuberculosis virulence

1 reference

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7 January 2021

Modulation of transcriptional and inflammatory responses in murine macrophages by the Mycobacterium tuberculosis mammalian cell entry (Mce) 1 complex

1 reference

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7 January 2021

Deletion of two-component regulatory systems increases the virulence of Mycobacterium tuberculosis

1 reference

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7 January 2021

The resurgence of tuberculosis in Russia

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https://api.crossref.org/works/10.1016%2FS1473-3099%2815%2900071-7

7 January 2021

Eighteenth-century genomes show that mixed infections were common at time of peak tuberculosis in Europe

1 reference

https://api.crossref.org/works/10.1016%2FS1473-3099%2815%2900071-7

7 January 2021

Pre-Columbian tuberculosis in northern Chile: molecular and skeletal evidence

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7 January 2021

Prehistoric tuberculosis in america: adding comments to a literature review

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7 January 2021

Mycobacterium africanum--review of an important cause of human tuberculosis in West Africa

1 reference

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7 January 2021

The Guinea-Bissau family of Mycobacterium tuberculosis complex revisited

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7 January 2021

First molecular epidemiology study of Mycobacterium tuberculosis in Burkina Faso

1 reference

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7 January 2021

Genetic Biodiversity of Mycobacterium tuberculosis Complex Strains from Patients with Pulmonary Tuberculosis in Cameroon

1 reference

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7 January 2021

Deciphering the growth behaviour of Mycobacterium africanum

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7 January 2021

Genes required for mycobacterial growth defined by high density mutagenesis

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https://api.crossref.org/works/10.1016%2FS1473-3099%2815%2900071-7

7 January 2021

Why doesn’t Mycobacterium tuberculosis spread in animals?

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https://api.crossref.org/works/10.1016%2FS1473-3099%2815%2900071-7

7 January 2021

The catalase-peroxidase gene and isoniazid resistance of Mycobacterium tuberculosis

1 reference

https://api.crossref.org/works/10.1016%2FS1473-3099%2815%2900071-7

7 January 2021

Efflux pump of the proton antiporter family confers low-level fluoroquinolone resistance in Mycobacterium smegmatis

1 reference

https://api.crossref.org/works/10.1016%2FS1473-3099%2815%2900071-7

7 January 2021

Tuberculosis drug discovery in the post-post-genomic era

1 reference

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7 January 2021

Identification of new drug targets and resistance mechanisms in Mycobacterium tuberculosis

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7 January 2021

A diarylquinoline drug active on the ATP synthase of Mycobacterium tuberculosis

1 reference

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7 January 2021

Why are membrane targets discovered by phenotypic screens and genome sequencing in Mycobacterium tuberculosis?

1 reference

https://api.crossref.org/works/10.1016%2FS1473-3099%2815%2900071-7

7 January 2021

Multitarget drug discovery for tuberculosis and other infectious diseases

1 reference

https://api.crossref.org/works/10.1016%2FS1473-3099%2815%2900071-7

7 January 2021

Novel insights into the mechanism of inhibition of MmpL3, a target of multiple pharmacophores in Mycobacterium tuberculosis

1 reference

https://api.crossref.org/works/10.1016%2FS1473-3099%2815%2900071-7

7 January 2021

Genetic Strategies for Identifying New Drug Targets

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7 January 2021

Multidrug-resistant tuberculosis in panama is driven by clonal expansion of a multidrug-resistant Mycobacterium tuberculosis strain related to the KZN extensively drug-resistant M. tuberculosis strain from South Africa

1 reference

https://api.crossref.org/works/10.1016%2FS1473-3099%2815%2900071-7

7 January 2021

Four decades of transmission of a multidrug-resistant Mycobacterium tuberculosis outbreak strain

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https://api.crossref.org/works/10.1016%2FS1473-3099%2815%2900071-7

7 January 2021

GWAMAR: genome-wide assessment of mutations associated with drug resistance in bacteria

1 reference

https://api.crossref.org/works/10.1016%2FS1473-3099%2815%2900071-7

7 January 2021

Effect of katG mutations on the virulence of Mycobacterium tuberculosis and the implication for transmission in humans.

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7 January 2021

Mechanism of thioamide drug action against tuberculosis and leprosy

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https://api.crossref.org/works/10.1016%2FS1473-3099%2815%2900071-7

7 January 2021

Compensatory ahpC gene expression in isoniazid-resistant Mycobacterium tuberculosis.

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https://api.crossref.org/works/10.1016%2FS1473-3099%2815%2900071-7

7 January 2021

Molecular genetic basis of antimicrobial agent resistance in Mycobacterium tuberculosis: 1998 update

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7 January 2021

Effect of rpoB mutations conferring rifampin resistance on fitness of Mycobacterium tuberculosis

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https://api.crossref.org/works/10.1016%2FS1473-3099%2815%2900071-7

7 January 2021

The competitive cost of antibiotic resistance in Mycobacterium tuberculosis

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https://api.crossref.org/works/10.1016%2FS1473-3099%2815%2900071-7

7 January 2021

Whole-genome sequencing of rifampicin-resistant Mycobacterium tuberculosis strains identifies compensatory mutations in RNA polymerase genes.

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https://api.crossref.org/works/10.1016%2FS1473-3099%2815%2900071-7

7 January 2021

The impact of drug resistance on Mycobacterium tuberculosis physiology: what can we learn from rifampicin?

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https://api.crossref.org/works/10.1016%2FS1473-3099%2815%2900071-7

7 January 2021

Positive epistasis drives the acquisition of multidrug resistance

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7 January 2021

Putative compensatory mutations in the rpoC gene of rifampin-resistant Mycobacterium tuberculosis are associated with ongoing transmission

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https://api.crossref.org/works/10.1016%2FS1473-3099%2815%2900071-7

7 January 2021

Genetic characterization of compensatory evolution in strains carrying rpoB Ser531Leu, the rifampicin resistance mutation most frequently found in clinical isolates.

1 reference

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7 January 2021

Fitness-compensatory mutations in rifampicin-resistant RNA polymerase

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7 January 2021

EthA, a common activator of thiocarbamide-containing drugs acting on different mycobacterial targets

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7 January 2021

The Rapid Development of Fluoroquinolone Resistance inM. tuberculosis

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7 January 2021

Current Prospects for the Fluoroquinolones as First-Line Tuberculosis Therapy

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https://api.crossref.org/works/10.1016%2FS1473-3099%2815%2900071-7

7 January 2021

Mycobacterium tuberculosis population structure determines the outcome of genetics-based second-line drug resistance testing

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https://api.crossref.org/works/10.1016%2FS1473-3099%2815%2900071-7

7 January 2021

Subpopulation analysis of heteroresistance to fluoroquinolone in Mycobacterium tuberculosis isolates from Beijing, China

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7 January 2021

Dynamic population changes in Mycobacterium tuberculosis during acquisition and fixation of drug resistance in patients

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7 January 2021

Whole genome sequencing reveals complex evolution patterns of multidrug-resistant Mycobacterium tuberculosis Beijing strains in patients

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7 January 2021

Evolution of extensively drug-resistant Mycobacterium tuberculosis from a susceptible ancestor in a single patient

1 reference

https://api.crossref.org/works/10.1016%2FS1473-3099%2815%2900071-7

7 January 2021

Genomic analysis identifies targets of convergent positive selection in drug-resistant Mycobacterium tuberculosis

1 reference

https://api.crossref.org/works/10.1016%2FS1473-3099%2815%2900071-7

7 January 2021

A phylogeny-based sampling strategy and power calculator informs genome-wide associations study design for microbial pathogens.

1 reference

https://api.crossref.org/works/10.1016%2FS1473-3099%2815%2900071-7

7 January 2021

Genome sequencing of 161 Mycobacterium tuberculosis isolates from China identifies genes and intergenic regions associated with drug resistance

1 reference

https://api.crossref.org/works/10.1016%2FS1473-3099%2815%2900071-7

7 January 2021

Genetic characterisation of the ethambutol resistance-determining region in Mycobacterium tuberculosis: prevalence and significance of embB306 mutations

1 reference

https://api.crossref.org/works/10.1016%2FS1473-3099%2815%2900071-7

7 January 2021

Evolution of high-level ethambutol-resistant tuberculosis through interacting mutations in decaprenylphosphoryl-β-D-arabinose biosynthetic and utilization pathway genes

1 reference

https://api.crossref.org/works/10.1016%2FS1473-3099%2815%2900071-7

7 January 2021

Genome-level analyses of Mycobacterium bovis lineages reveal the role of SNPs and antisense transcription in differential gene expression

1 reference

https://api.crossref.org/works/10.1016%2FS1473-3099%2815%2900071-7

7 January 2021

Mapping of genotype-phenotype diversity among clinical isolates of mycobacterium tuberculosis by sequence-based transcriptional profiling

1 reference

https://api.crossref.org/works/10.1016%2FS1473-3099%2815%2900071-7

7 January 2021

Mutations in the regulatory network underlie the recent clonal expansion of a dominant subclone of the Mycobacterium tuberculosis Beijing genotype

1 reference

https://api.crossref.org/works/10.1016%2FS1473-3099%2815%2900071-7

7 January 2021

PolyTB: a genomic variation map for Mycobacterium tuberculosis

1 reference

https://api.crossref.org/works/10.1016%2FS1473-3099%2815%2900071-7

7 January 2021

Genome-wide Mycobacterium tuberculosis variation (GMTV) database: a new tool for integrating sequence variations and epidemiology

1 reference

https://api.crossref.org/works/10.1016%2FS1473-3099%2815%2900071-7

7 January 2021

tbvar: A comprehensive genome variation resource for Mycobacterium tuberculosis

1 reference

https://api.crossref.org/works/10.1016%2FS1473-3099%2815%2900071-7

7 January 2021

Tuberculosis drug resistance mutation database

1 reference

https://api.crossref.org/works/10.1016%2FS1473-3099%2815%2900071-7

7 January 2021

MGDD: Mycobacterium tuberculosis genome divergence database

1 reference

https://api.crossref.org/works/10.1016%2FS1473-3099%2815%2900071-7

7 January 2021

MTCID: a database of genetic polymorphisms in clinical isolates of Mycobacterium tuberculosis

1 reference

https://api.crossref.org/works/10.1016%2FS1473-3099%2815%2900071-7

7 January 2021

dbSNP: the NCBI database of genetic variation

1 reference

https://api.crossref.org/works/10.1016%2FS1473-3099%2815%2900071-7

7 January 2021

TB database: an integrated platform for tuberculosis research

1 reference

https://api.crossref.org/works/10.1016%2FS1473-3099%2815%2900071-7

7 January 2021

TubercuList--10 years after

1 reference

https://api.crossref.org/works/10.1016%2FS1473-3099%2815%2900071-7

7 January 2021

TBrowse: an integrative genomics map of Mycobacterium tuberculosis

1 reference

https://api.crossref.org/works/10.1016%2FS1473-3099%2815%2900071-7

7 January 2021

Pyrosequencing for rapid detection of extensively drug-resistant Mycobacterium tuberculosis in clinical isolates and clinical specimens

1 reference

https://api.crossref.org/works/10.1016%2FS1473-3099%2815%2900071-7

7 January 2021

Evaluation of pyrosequencing for detecting extensively drug-resistant Mycobacterium tuberculosis among clinical isolates from four high-burden countries

1 reference

https://api.crossref.org/works/10.1016%2FS1473-3099%2815%2900071-7

7 January 2021

Prediction of Staphylococcus aureus antimicrobial resistance by whole-genome sequencing.

1 reference

https://api.crossref.org/works/10.1016%2FS1473-3099%2815%2900071-7

7 January 2021

The usefulness of whole genome sequencing in the management of Staphylococcus aureus infections.

1 reference

https://api.crossref.org/works/10.1016%2FS1473-3099%2815%2900071-7

7 January 2021

KvarQ: targeted and direct variant calling from fastq reads of bacterial genomes.

1 reference

https://api.crossref.org/works/10.1016%2FS1473-3099%2815%2900071-7

7 January 2021

PhyResSE: a Web Tool Delineating Mycobacterium tuberculosis Antibiotic Resistance and Lineage from Whole-Genome Sequencing Data

1 reference

https://api.crossref.org/works/10.1016%2FS1473-3099%2815%2900071-7

7 January 2021

MUBII-TB-DB: a database of mutations associated with antibiotic resistance in Mycobacterium tuberculosis

1 reference

https://api.crossref.org/works/10.1016%2FS1473-3099%2815%2900071-7

7 January 2021

Whole-genome sequencing for prediction of Mycobacterium tuberculosis drug susceptibility and resistance: a retrospective cohort study

1 reference

https://api.crossref.org/works/10.1016%2FS1473-3099%2815%2900071-7

7 January 2021

Rapid determination of anti-tuberculosis drug resistance from whole-genome sequences

1 reference

https://api.crossref.org/works/10.1016%2FS1473-3099%2815%2900071-7

7 January 2021

Whole genome sequencing based characterization of extensively drug-resistant Mycobacterium tuberculosis isolates from Pakistan

1 reference

https://api.crossref.org/works/10.1016%2FS1473-3099%2815%2900071-7

7 January 2021

Transmitted Extended-Spectrum Extensively Drug-Resistant Tuberculosis in Beijing, China, with Discordant Whole-Genome Sequencing Analysis Results

1 reference

https://api.crossref.org/works/10.1016%2FS1473-3099%2815%2900071-7

7 January 2021

Towards genomic prediction of drug resistance in tuberculosis.

1 reference

https://api.crossref.org/works/10.1016%2FS1473-3099%2815%2900071-7

7 January 2021

Clinical application of whole-genome sequencing to inform treatment for multidrug-resistant tuberculosis cases

1 reference

https://api.crossref.org/works/10.1016%2FS1473-3099%2815%2900071-7

7 January 2021

SNP/RD typing of Mycobacterium tuberculosis Beijing strains reveals local and worldwide disseminated clonal complexes

1 reference

https://api.crossref.org/works/10.1016%2FS1473-3099%2815%2900071-7

7 January 2021

High resolution discrimination of clinical Mycobacterium tuberculosis complex strains based on single nucleotide polymorphisms

1 reference

https://api.crossref.org/works/10.1016%2FS1473-3099%2815%2900071-7

7 January 2021

A robust SNP barcode for typing Mycobacterium tuberculosis complex strains.

1 reference

https://api.crossref.org/works/10.1016%2FS1473-3099%2815%2900071-7

7 January 2021

Fast and low-cost decentralized surveillance of transmission of tuberculosis based on strain-specific PCRs tailored from whole genome sequencing data: a pilot study.

1 reference

https://api.crossref.org/works/10.1016%2FS1473-3099%2815%2900071-7

7 January 2021

Combined species identification, genotyping, and drug resistance detection of Mycobacterium tuberculosis cultures by MLPA on a bead-based array

1 reference

https://api.crossref.org/works/10.1016%2FS1473-3099%2815%2900071-7

7 January 2021

Optimizing multiplex SNP-based data analysis for genotyping of Mycobacterium tuberculosis isolates

1 reference

https://api.crossref.org/works/10.1016%2FS1473-3099%2815%2900071-7

7 January 2021

Transfer of a Mycobacterium tuberculosis genotyping method, Spoligotyping, from a reverse line-blot hybridization, membrane-based assay to the Luminex multianalyte profiling system

1 reference

https://api.crossref.org/works/10.1016%2FS1473-3099%2815%2900071-7

7 January 2021

The use of microbead-based spoligotyping for Mycobacterium tuberculosis complex to evaluate the quality of the conventional method: providing guidelines for Quality Assurance when working on membranes

1 reference

https://api.crossref.org/works/10.1016%2FS1473-3099%2815%2900071-7

7 January 2021

Tuberculosis-spoligo-rifampin-isoniazid typing: an all-in-one assay technique for surveillance and control of multidrug-resistant tuberculosis on Luminex devices

1 reference

https://api.crossref.org/works/10.1016%2FS1473-3099%2815%2900071-7

7 January 2021

Two new rapid SNP-typing methods for classifying mycobacterium tuberculosis complex into the main phylogenetic lineages

1 reference

https://api.crossref.org/works/10.1016%2FS1473-3099%2815%2900071-7

7 January 2021

Construction of a virtual Mycobacterium tuberculosis consensus genome and its application to data from a next generation sequencer

1 reference

https://api.crossref.org/works/10.1016%2FS1473-3099%2815%2900071-7

7 January 2021

Biomimetic nanopores: a new age of DNA sequencing?

1 reference

https://api.crossref.org/works/10.1016%2FS1473-3099%2815%2900071-7

7 January 2021

A first look at the Oxford Nanopore MinION sequencer

1 reference

https://api.crossref.org/works/10.1016%2FS1473-3099%2815%2900071-7

7 January 2021

Culture-independent detection and characterisation of Mycobacterium tuberculosis and M. africanum in sputum samples using shotgun metagenomics on a benchtop sequencer

1 reference

https://api.crossref.org/works/10.1016%2FS1473-3099%2815%2900071-7

7 January 2021

Whole-genome sequences of Chlamydia trachomatis directly from clinical samples without culture

1 reference

https://api.crossref.org/works/10.1016%2FS1473-3099%2815%2900071-7

7 January 2021

Genomic sequencing of uncultured microorganisms from single cells

1 reference

https://api.crossref.org/works/10.1016%2FS1473-3099%2815%2900071-7

7 January 2021

A proportion of mutations fixed in the genomes of in vitro selected isogenic drug-resistant Mycobacterium tuberculosis mutants can be detected as minority variants in the parent culture

1 reference

https://api.crossref.org/works/10.1016%2FS1473-3099%2815%2900071-7

7 January 2021

Mycobacterial DNA extraction for whole-genome sequencing from early positive liquid (MGIT) cultures

1 reference

https://api.crossref.org/works/10.1016%2FS1473-3099%2815%2900071-7

7 January 2021

Feasibility of magnetic bead technology for concentration of mycobacteria in sputum prior to fluorescence microscopy

1 reference

https://api.crossref.org/works/10.1016%2FS1473-3099%2815%2900071-7

7 January 2021

Magnetic bead protocol for culturing Mycobacterium tuberculosis from sputum specimens

1 reference

https://api.crossref.org/works/10.1016%2FS1473-3099%2815%2900071-7

7 January 2021

Increased case finding of tuberculosis from sputum and sputum deposits after magnetic bead concentration of mycobacteria

1 reference

https://api.crossref.org/works/10.1016%2FS1473-3099%2815%2900071-7

7 January 2021

Rapid Whole-Genome Sequencing of Mycobacterium tuberculosis Isolates Directly from Clinical Samples

1 reference

https://api.crossref.org/works/10.1016%2FS1473-3099%2815%2900071-7

7 January 2021

Xpert MTB/RIF: a New Pillar in Diagnosis of Extrapulmonary Tuberculosis?

1 reference

https://api.crossref.org/works/10.1016%2FS1473-3099%2815%2900071-7

7 January 2021

Commentary: Call for a Quality Standard for Sequence-Based Assays in Clinical Microbiology: Necessity for Quality Assessment of Sequences Used in Microbial Identification and Typing

1 reference

https://api.crossref.org/works/10.1016%2FS1473-3099%2815%2900071-7

7 January 2021

Assuring the quality of next-generation sequencing in clinical laboratory practice

1 reference

https://api.crossref.org/works/10.1016%2FS1473-3099%2815%2900071-7

7 January 2021