A minimalist biosensor: Quantitation of cyclic di-GMP using the conformational change of a riboswitch aptamer (Q38298055)

1 September 2017

A minimalist biosensor: Quantitation of cyclic di-GMP using the conformational change of a riboswitch aptamer (English)

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1 September 2017

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Colleen A Kellenberger

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1 September 2017

Jade Sales-Lee

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1 September 2017

Yuchen Pan

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1 September 2017

Madalee M Gassaway

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1 September 2017

Amy E Herr

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1 September 2017

Ming C Hammond

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1 September 2017

26 June 2015

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1 September 2017

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1 September 2017

1189-1197

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describes a project that uses

1 September 2017

ImageJ

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11 June 2022

https://www.ebi.ac.uk/europepmc/webservices/rest/PMC4829349/fullTextXML

based on heuristic

inferred from PubMed Central ID database lookup

cites work

Control of bacterial exoelectrogenesis by c-AMP-GMP.

1 reference

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GEMM-I riboswitches from Geobacter sense the bacterial second messenger cyclic AMP-GMP

6 September 2017

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A neutral pH thermal hydrolysis method for quantification of structured RNAs.

6 September 2017

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Riboswitches in eubacteria sense the second messenger c-di-AMP

6 September 2017

1 reference

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Nutritional control of epigenetic processes in yeast and human cells

6 September 2017

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Cyclic di-GMP: the first 25 years of a universal bacterial second messenger

6 September 2017

1 reference

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Probing the activity of diguanylate cyclases and c-di-GMP phosphodiesterases in real-time by CD spectroscopy

6 September 2017

1 reference

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Microfluidic screening of electrophoretic mobility shifts elucidates riboswitch binding function

6 September 2017

1 reference

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A study of Chitosan and c-di-GMP as mucosal adjuvants for intranasal influenza H5N1 vaccine.

6 September 2017

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Quantification of high-specificity cyclic diguanylate signaling.

6 September 2017

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Engineered allosteric ribozymes that sense the bacterial second messenger cyclic diguanosyl 5'-monophosphate.

6 September 2017

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Coordinated regulation of accessory genetic elements produces cyclic di-nucleotides for V. cholerae virulence

6 September 2017

1 reference

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Fluorescence imaging of cellular metabolites with RNA.

6 September 2017

1 reference

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Allosteric tertiary interactions preorganize the c-di-GMP riboswitch and accelerate ligand binding

6 September 2017

1 reference

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Mechanism for gene control by a natural allosteric group I ribozyme

6 September 2017

1 reference

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STING is a direct innate immune sensor of cyclic di-GMP

6 September 2017

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Differential radial capillary action of ligand assay for high-throughput detection of protein-metabolite interactions

6 September 2017

1 reference

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Differential analogue binding by two classes of c-di-GMP riboswitches

6 September 2017

1 reference

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RNA mimics of green fluorescent protein

6 September 2017

1 reference

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Structural and Biochemical Determinants of Ligand Binding by the c-di-GMP Riboswitch,

6 September 2017

1 reference

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Asymmetrical distribution of the second messenger c-di-GMP upon bacterial cell division

6 September 2017

1 reference

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Recognition of the bacterial second messenger cyclic diguanylate by its cognate riboswitch

6 September 2017

1 reference

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Structural basis of ligand binding by a c-di-GMP riboswitch

6 September 2017

1 reference

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Principles of c-di-GMP signalling in bacteria

6 September 2017

1 reference

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Quantitative determination of cyclic diguanosine monophosphate concentrations in nucleotide extracts of bacteria by matrix-assisted laser desorption/ionization-time-of-flight mass spectrometry

6 September 2017

1 reference

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Regulation of cellulose synthesis in Acetobacter xylinum by cyclic diguanylic acid

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4829349

Riboswitches in eubacteria sense the second messenger cyclic di-GMP

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4829349

In-line probing analysis of riboswitches

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4829349

Folding of the SAM aptamer is determined by the formation of a K-turn-dependent pseudoknot

6 September 2017

1 reference

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Riboswitches as antibacterial drug targets

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4829349

Construction of Escherichia coli K-12 in-frame, single-gene knockout mutants: the Keio collection

6 September 2017

1 reference

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High-throughput electrophoretic mobility shift assays for quantitative analysis of molecular binding reactions

6 September 2017

1 reference

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RNA-based fluorescent biosensors for live cell imaging of second messengers cyclic di-GMP and cyclic AMP-GMP

23 June 2018

1 reference

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Visualizing the perturbation of cellular cyclic di-GMP levels in bacterial cells

23 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4829349

A C-di-GMP-proflavine-hemin supramolecular complex has peroxidase activity--implication for a simple colorimetric detection.

31 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4829349

Thiazole orange-induced c-di-GMP quadruplex formation facilitates a simple fluorescent detection of this ubiquitous biofilm regulating molecule.

31 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4829349

Comparative genomics of cyclic-di-GMP signalling in bacteria: post-translational regulation and catalytic activity.

31 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4829349

A liquid chromatography-coupled tandem mass spectrometry method for quantitation of cyclic di-guanosine monophosphate

31 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4829349

Gene expression patterns and differential input into curli fimbriae regulation of all GGDEF/EAL domain proteins in Escherichia coli

31 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4829349

Inverse regulatory coordination of motility and curli-mediated adhesion in Escherichia coli

31 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4829349

Cyclic-di-GMP-mediated signalling within the sigma network of Escherichia coli.

31 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4829349

The kinetics of ligand binding by an adenine-sensing riboswitch

31 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4829349

A chemical proteomics approach to identify c-di-GMP binding proteins in Pseudomonas aeruginosa

31 August 2018

1 reference

Crossref

https://api.crossref.org/works/10.1080%2F15476286.2015.1062970

Nanomolar fluorescent detection of c-di-GMP using a modular aptamer strategy

21 January 2018

1 reference

Crossref

https://api.crossref.org/works/10.1080%2F15476286.2015.1062970

The Speed of RNA Transcription and Metabolite Binding Kinetics Operate an FMN Riboswitch

21 January 2018

1 reference

Crossref

https://api.crossref.org/works/10.1080%2F15476286.2015.1062970

RNA conformational changes analyzed by comparative gel electrophoresis

21 January 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/26114964

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1080/15476286.2015.1062970

1 reference

1 September 2017

1 reference

1 September 2017

PubMed publication ID

26114964

1 reference