Tb3+-Cleavage Assays Reveal Specific Mg2+ Binding Sites Necessary to Pre-fold the btuB Riboswitch for AdoCbl Binding (Q37712492)

22 August 2017

Tb3+-Cleavage Assays Reveal Specific Mg2+ Binding Sites Necessary to Pre-fold the btuB Riboswitch for AdoCbl Binding (English)

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22 August 2017

Pallavi K Choudhary

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22 August 2017

Sofia Gallo

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22 August 2017

Roland K O Sigel

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22 August 2017

21 March 2017

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22 August 2017

Frontiers in Chemistry

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22 August 2017

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22 August 2017

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22 August 2017

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11 June 2022

https://www.ebi.ac.uk/europepmc/webservices/rest/PMC5359240/fullTextXML

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Single transcriptional and translational preQ1 riboswitches adopt similar pre-folded ensembles that follow distinct folding pathways into the same ligand-bound structure

23 August 2017

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Single-molecule studies of the lysine riboswitch reveal effector-dependent conformational dynamics of the aptamer domain

23 August 2017

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Structural insights into ligand binding and gene expression control by an adenosylcobalamin riboswitch

23 August 2017

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B12 cofactors directly stabilize an mRNA regulatory switch

23 August 2017

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23 August 2017

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Idiosyncratically tuned switching behavior of riboswitch aptamer domains revealed by comparative small-angle X-ray scattering analysis

23 August 2017

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A trans-acting riboswitch controls expression of the virulence regulator PrfA in Listeria monocytogenes

23 August 2017

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23 August 2017

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Crystal structure of the lysine riboswitch regulatory mRNA element

23 August 2017

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23 August 2017

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Probing RNA structure and metal-binding sites using terbium(III) footprinting

23 August 2017

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In-line probing analysis of riboswitches

23 August 2017

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Structural basis of glmS ribozyme activation by glucosamine-6-phosphate

23 August 2017

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Evidence for preorganization of the glmS ribozyme ligand binding pocket

23 August 2017

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Metal ions and RNA folding: a highly charged topic with a dynamic future

23 August 2017

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Riboswitches exert genetic control through metabolite-induced conformational change

23 August 2017

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Gene regulation by riboswitches

23 August 2017

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Control of gene expression by a natural metabolite-responsive ribozyme

23 August 2017

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Coenzyme B12 riboswitches are widespread genetic control elements in prokaryotes

23 August 2017

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Thiamine-regulated gene expression of Aspergillus oryzae thiA requires splicing of the intron containing a riboswitch-like domain in the 5'-UTR

23 August 2017

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Genetic control by metabolite-binding riboswitches

23 August 2017

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Outersphere and innersphere coordinated metal ions in an aminoacyl-tRNA synthetase ribozyme

23 August 2017

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Sensing Small Molecules by Nascent RNA

23 August 2017

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Thiamine derivatives bind messenger RNAs directly to regulate bacterial gene expression

23 August 2017

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Genetic control by a metabolite binding mRNA

23 August 2017

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Metal ions in the structure and function of RNA.

23 August 2017

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Adenosylcobalamin inhibits ribosome binding to btuB RNA

23 August 2017

1 reference

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Tertiary Motifs in RNA Structure and Folding

23 August 2017

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On the role of magnesium ions in RNA stability

23 August 2017

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Altered binding and transport of vitamin B12 resulting from insertion mutations in the Escherichia coli btuB gene

23 August 2017

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Methods to detect and characterize metal ion binding sites in RNA.

23 August 2017

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Molecular insights into the ligand-controlled organization of the SAM-I riboswitch

6 September 2017

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New insights into riboswitch regulation mechanisms

6 September 2017

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Metal-ion binding and metal-ion induced folding of the adenine-sensing riboswitch aptamer domain

6 September 2017

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Probing the environment of lanthanide binding sites in yeast tRNA(Phe) by specific metal-ion-promoted cleavages

6 September 2017

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Monitoring global structural changes and specific metal-ion-binding sites in RNA by in-line probing and Tb(III) cleavage.

23 June 2018

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The corrin moiety of coenzyme B12 is the determinant for switching the btuB riboswitch of E. coli.

1 September 2018

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5359240

A kinetic intermediate that regulates proper folding of a group II intron RNA.

1 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5359240

Terbium-mediated footprinting probes a catalytic conformational switch in the antigenomic hepatitis delta virus ribozyme

1 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5359240

Conservation of helical structure contributes to functional metal ion interactions in the catalytic domain of ribonuclease P RNA.

1 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5359240

Probing non-selective cation binding in the hairpin ribozyme with Tb(III).

1 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5359240

Metal ion binding sites in a group II intron core

1 September 2018

1 reference

12 December 2020

Lanthanide ions as probes for metal ions in the structure and catalytic mechanism of ribozymes

1 reference

12 December 2020

Probing Ribosome Structure by Europium-Induced RNA Cleavage

1 reference

12 December 2020

Transport of vitamin B12 in Escherichia coli. Some observations on the roles of the gene products of BtuC and TonB

1 reference

12 December 2020

Sensing small molecules by nascent RNA: a mechanism to control transcription in bacteria

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12 December 2020

Identifiers

DOI

10.3389/FCHEM.2017.00010

1 reference

22 August 2017

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22 August 2017

PubMed publication ID

28377919

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