Sense and nonsense from a systems biology approach to microbial recombinant protein production (Q37665886)

21 August 2017

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title

Sense and nonsense from a systems biology approach to microbial recombinant protein production (English)

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21 August 2017

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Yanina R Sevastsyanovich

series ordinal

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21 August 2017

Sara N Alfasi

series ordinal

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21 August 2017

Jeffrey A Cole

series ordinal

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21 August 2017

publication date

4 January 2010

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Biotechnology and Applied Biochemistry

21 August 2017

published in

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21 August 2017

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21 August 2017

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21 August 2017

page(s)

9-28

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Recombinant protein folding and misfolding in Escherichia coli

21 August 2017

cites work

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https://api.crossref.org/works/10.1042%2FBA20090174

Global transcriptome response of recombinant Escherichia coli to heat-shock and dual heat-shock recombinant protein induction

21 January 2018

1 reference

https://api.crossref.org/works/10.1042%2FBA20090174

Response dynamics of 26-, 34-, 39-, 54-, and 80-kDa proteases in induced cultures of recombinant Escherichia coli

21 January 2018

1 reference

https://api.crossref.org/works/10.1042%2FBA20090174

A comparative study of global stress gene regulation in response to overexpression of recombinant proteins in Escherichia coli

21 January 2018

1 reference

https://api.crossref.org/works/10.1042%2FBA20090174

Induction of heat shock proteins by abnormal proteins results from stabilization and not increased synthesis of sigma 32 in Escherichia coli

21 January 2018

1 reference

https://api.crossref.org/works/10.1042%2FBA20090174

Gene expression response to misfolded protein as a screen for soluble recombinant protein

21 January 2018

1 reference

https://api.crossref.org/works/10.1042%2FBA20090174

Protein folding in the cytoplasm of Escherichia coli: requirements for the DnaK-DnaJ-GrpE and GroEL-GroES molecular chaperone machines.

21 January 2018

1 reference

https://api.crossref.org/works/10.1042%2FBA20090174

Accumulation of secretory protein precursors in Escherichia coli induces the heat shock response

21 January 2018

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https://api.crossref.org/works/10.1042%2FBA20090174

Divergent genetic control of protein solubility and conformational quality in Escherichia coli

21 January 2018

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https://api.crossref.org/works/10.1042%2FBA20090174

Exploitation of GFP fusion proteins and stress avoidance as a generic strategy for the production of high-quality recombinant proteins

21 January 2018

1 reference

https://api.crossref.org/works/10.1042%2FBA20090174

Multimerization of high copy number plasmids causes instability: Cole 1 encodes a determinant essential for plasmid monomerization and stability

21 January 2018

1 reference

https://api.crossref.org/works/10.1042%2FBA20090174

Recombinant protein production: a comparative view on host physiology

21 January 2018

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https://api.crossref.org/works/10.1042%2FBA20090174

The regulation of bacterial transcription initiation

21 January 2018

1 reference

https://api.crossref.org/works/10.1042%2FBA20090174

Functional modulation of Escherichia coli RNA polymerase

21 January 2018

1 reference

https://api.crossref.org/works/10.1042%2FBA20090174

The functional and regulatory roles of sigma factors in transcription

21 January 2018

1 reference

https://api.crossref.org/works/10.1042%2FBA20090174

Periplasmic stress and ECF sigma factors

21 January 2018

1 reference

https://api.crossref.org/works/10.1042%2FBA20090174

Genomic analysis of high-cell-density recombinant Escherichia coli fermentation and "cell conditioning" for improved recombinant protein yield

21 January 2018

1 reference

https://api.crossref.org/works/10.1042%2FBA20090174

Extensive functional overlap between sigma factors in Escherichia coli.

21 January 2018

1 reference

https://api.crossref.org/works/10.1042%2FBA20090174

Cleavage of the cII protein of phage lambda by purified HflA protease: control of the switch between lysis and lysogeny

21 January 2018

1 reference

https://api.crossref.org/works/10.1042%2FBA20090174

Region C of the Escherichia coli heat shock sigma factor RpoH (sigma 32) contains a turnover element for proteolysis by the FtsH protease.

21 January 2018

1 reference

https://api.crossref.org/works/10.1042%2FBA20090174

Specific aggregation of partially folded polypeptide chains: the molecular basis of inclusion body composition

21 January 2018

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https://api.crossref.org/works/10.1042%2FBA20090174

Formation of active inclusion bodies in the periplasm of Escherichia coli.

21 January 2018

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https://api.crossref.org/works/10.1042%2FBA20090174

Protein quality control in the bacterial periplasm

21 January 2018

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https://api.crossref.org/works/10.1042%2FBA20090174

Quality control in the bacterial periplasm

21 January 2018

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https://api.crossref.org/works/10.1042%2FBA20090174

The transcriptional response of Escherichia coli to recombinant protein insolubility.

21 January 2018

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https://api.crossref.org/works/10.1042%2FBA20090174

Protein compositional analysis of inclusion bodies produced in recombinant Escherichia coli

21 January 2018

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https://api.crossref.org/works/10.1042%2FBA20090174

Localization of chaperones DnaK and GroEL in bacterial inclusion bodies

21 January 2018

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https://api.crossref.org/works/10.1042%2FBA20090174

Strategies for the recovery of active proteins through refolding of bacterial inclusion body proteins

21 January 2018

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https://api.crossref.org/works/10.1042%2FBA20090174

Protein aggregation in recombinant bacteria: biological role of inclusion bodies.

21 January 2018

1 reference

https://api.crossref.org/works/10.1042%2FBA20090174

Physical interaction between heat shock proteins DnaK, DnaJ, and GrpE and the bacterial heat shock transcription factor sigma 32

21 January 2018

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https://api.crossref.org/works/10.1042%2FBA20090174

A chaperone network controls the heat shock response in E. coli

21 January 2018

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https://api.crossref.org/works/10.1042%2FBA20090174

Design of transcriptional fusions of stress sensitive promoters and GFP to monitor the overburden of Escherichia coli hosts during recombinant protein production

21 January 2018

1 reference

https://api.crossref.org/works/10.1042%2FBA20090174

Over-production of proteins in Escherichia coli: mutant hosts that allow synthesis of some membrane proteins and globular proteins at high levels

21 January 2018

1 reference

https://api.crossref.org/works/10.1042%2FBA20090174

Identification of Escherichia coli host cell for high plasmid stability and improved production of antihuman ovarian carcinoma x antihuman CD3 single-chain bispecific antibody

21 January 2018

1 reference

https://api.crossref.org/works/10.1042%2FBA20090174

Toxicity-based selection of Escherichia coli mutants for functional recombinant protein production: application to an antibody fragment

21 January 2018

1 reference

https://api.crossref.org/works/10.1042%2FBA20090174

Construction and characterization of versatile cloning vectors for efficient delivery of native foreign proteins to the periplasm of Escherichia coli.

21 January 2018

1 reference

https://api.crossref.org/works/10.1042%2FBA20090174

Secretory and extracellular production of recombinant proteins using Escherichia coli

21 January 2018

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https://api.crossref.org/works/10.1042%2FBA20090174

Preparative expression of secreted proteins in bacteria: status report and future prospects

21 January 2018

1 reference

https://api.crossref.org/works/10.1042%2FBA20090174

A system for concomitant overexpression of four periplasmic folding catalysts to improve secretory protein production in Escherichia coli.

21 January 2018

1 reference

https://api.crossref.org/works/10.1042%2FBA20090174

proBA complementation of an auxotrophic E. coli strain improves plasmid stability and expression yield during fermenter production of a recombinant antibody fragment

21 January 2018

1 reference

https://api.crossref.org/works/10.1042%2FBA20090174

A host/plasmid system that is not dependent on antibiotics and antibiotic resistance genes for stable plasmid maintenance in Escherichia coli

21 January 2018

1 reference

https://api.crossref.org/works/10.1042%2FBA20090174

Construction of highly efficient E. coli expression systems containing low oxygen induced promoter and partition region

21 January 2018

1 reference

https://api.crossref.org/works/10.1042%2FBA20090174

Recombinant protein expression in Escherichia coli

21 January 2018

1 reference

https://api.crossref.org/works/10.1042%2FBA20090174

A novel feeding strategy for enhanced plasmid stability and protein production in recombinant yeast fedbatch fermentation

21 January 2018

1 reference

https://api.crossref.org/works/10.1042%2FBA20090174

Growth temperature downshift induces antioxidant response in Saccharomyces cerevisiae

21 January 2018

1 reference

https://api.crossref.org/works/10.1042%2FBA20090174

Stringent regulation and high-level expression of heterologous genes in Escherichia coli using T7 system controllable by the araBAD promoter

21 January 2018

1 reference

https://api.crossref.org/works/10.1042%2FBA20090174

DNA microarray detection of metabolic responses to protein overproduction in Escherichia coli

21 January 2018

1 reference

https://api.crossref.org/works/10.1042%2FBA20090174

Transcriptional response of Escherichia coli to temperature shift

21 January 2018

1 reference

https://api.crossref.org/works/10.1042%2FBA20090174

Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli

21 January 2018

1 reference

https://api.crossref.org/works/10.1042%2FBA20090174

Monitoring of transcriptome and proteome profiles to investigate the cellular response of E. coli towards recombinant protein expression under defined chemostat conditions

21 January 2018

1 reference

https://api.crossref.org/works/10.1042%2FBA20090174

Monitoring of genes that respond to overproduction of an insoluble recombinant protein in Escherichia coli glucose-limited fed-batch fermentations.

21 January 2018

1 reference

https://api.crossref.org/works/10.1042%2FBA20090174

Gene expression profiling of Escherichia coli growth transitions: an expanded stringent response model

21 January 2018

1 reference

https://api.crossref.org/works/10.1042%2FBA20090174

Proteomic profiling of Escherichia coli proteins under high cell density fed-batch cultivation with overexpression of phosphogluconolactonase

21 January 2018

1 reference

https://api.crossref.org/works/10.1042%2FBA20090174

Proteome response of Escherichia coli fed-batch culture to temperature downshift

21 January 2018

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https://api.crossref.org/works/10.1042%2FBA20090174

Comparison of the Escherichia coli proteomes for recombinant human growth hormone producing and nonproducing fermentations.

21 January 2018

1 reference

https://api.crossref.org/works/10.1042%2FBA20090174

Proteomic profiling of recombinant Escherichia coli in high-cell-density fermentations for improved production of an antibody fragment biopharmaceutical

21 January 2018

1 reference

https://api.crossref.org/works/10.1042%2FBA20090174

Proteome analysis of Escherichia coli W3110 expressing an heterologous sigma factor

21 January 2018

1 reference

https://api.crossref.org/works/10.1042%2FBA20090174

Potential of real-time measurement of GFP-fusion proteins.

21 January 2018

1 reference

https://api.crossref.org/works/10.1042%2FBA20090174

Lactococcus lactis, an efficient cell factory for recombinant protein production and secretion.

21 January 2018

1 reference

https://api.crossref.org/works/10.1042%2FBA20090174

Molecular characterization of the pH-inducible and growth phase-dependent promoter P170 of Lactococcus lactis.

21 January 2018

1 reference

https://api.crossref.org/works/10.1042%2FBA20090174

Regulated expression of heterologous genes in Bacillus subtilis using the Tn10 encoded tet regulatory elements

21 January 2018

1 reference

https://api.crossref.org/works/10.1042%2FBA20090174

Expression vectors for the rapid purification of recombinant proteins in Bacillus subtilis.

21 January 2018

1 reference

https://api.crossref.org/works/10.1042%2FBA20090174

Overproduction of trehalose: heterologous expression of Escherichia coli trehalose-6-phosphate synthase and trehalose-6-phosphate phosphatase in Corynebacterium glutamicum.

21 January 2018

1 reference

https://api.crossref.org/works/10.1042%2FBA20090174

Bottlenecks in the expression and secretion of heterologous proteins in Bacillus subtilis

21 January 2018

1 reference

https://api.crossref.org/works/10.1042%2FBA20090174

Bacillus subtilis as cell factory for pharmaceutical proteins: a biotechnological approach to optimize the host organism

21 January 2018

1 reference

https://api.crossref.org/works/10.1042%2FBA20090174

Functional production and characterization of a fibrin-specific single-chain antibody fragment from Bacillus subtilis: effects of molecular chaperones and a wall-bound protease on antibody fragment production.

21 January 2018

1 reference

https://api.crossref.org/works/10.1042%2FBA20090174

Functional analysis of the Lactococcus lactis usp45 secretion signal in the secretion of a homologous proteinase and a heterologous alpha-amylase.

21 January 2018

1 reference

https://api.crossref.org/works/10.1042%2FBA20090174

Proteome and transcriptome based analysis of Bacillus subtilis cells overproducing an insoluble heterologous protein.

21 January 2018

1 reference

https://api.crossref.org/works/10.1042%2FBA20090174

A novel two-component regulatory system in Bacillus subtilis for the survival of severe secretion stress

21 January 2018

1 reference

https://api.crossref.org/works/10.1042%2FBA20090174

Complementation of the Lactococcus lactis secretion machinery with Bacillus subtilis SecDF improves secretion of staphylococcal nuclease

21 January 2018

1 reference

https://api.crossref.org/works/10.1042%2FBA20090174

The extracellular proteome of Bacillus subtilis under secretion stress conditions

21 January 2018

1 reference

https://api.crossref.org/works/10.1042%2FBA20090174

Bacillus subtilis functional genomics: global characterization of the stringent response by proteome and transcriptome analysis.

21 January 2018

1 reference

https://api.crossref.org/works/10.1042%2FBA20090174

Production of recombinant proteins in fermenter cultures of the yeast Pichia pastoris

21 January 2018

1 reference

https://api.crossref.org/works/10.1042%2FBA20090174

Protein folding and conformational stress in microbial cells producing recombinant proteins: a host comparative overview

21 January 2018

1 reference

https://api.crossref.org/works/10.1042%2FBA20090174

Efficient production of secreted proteins by Aspergillus: progress, limitations and prospects

21 January 2018

1 reference

https://api.crossref.org/works/10.1042%2FBA20090174

Stress in recombinant protein producing yeasts.

21 January 2018

1 reference

https://api.crossref.org/works/10.1042%2FBA20090174

Heterologous protein expression in filamentous fungi

21 January 2018

1 reference

https://api.crossref.org/works/10.1042%2FBA20090174

Functional and genomic analyses reveal an essential coordination between the unfolded protein response and ER-associated degradation

21 January 2018

1 reference

https://api.crossref.org/works/10.1042%2FBA20090174

Novel insights into the unfolded protein response using Pichia pastoris specific DNA microarrays.

21 January 2018

1 reference

https://api.crossref.org/works/10.1042%2FBA20090174

Common features and interesting differences in transcriptional responses to secretion stress in the fungi Trichoderma reesei and Saccharomyces cerevisiae

21 January 2018

1 reference

https://api.crossref.org/works/10.1042%2FBA20090174

Genomic analysis of the secretion stress response in the enzyme-producing cell factory Aspergillus niger

21 January 2018

1 reference

https://api.crossref.org/works/10.1042%2FBA20090174

Transcriptome analysis of recombinant protein secretion by Aspergillus nidulans and the unfolded-protein response in vivo

21 January 2018

1 reference

https://api.crossref.org/works/10.1042%2FBA20090174

Differential gene expression in recombinant Pichia pastoris analysed by heterologous DNA microarray hybridisation

21 January 2018

1 reference

https://api.crossref.org/works/10.1042%2FBA20090174

Monitoring of transcriptional regulation in Pichia pastoris under protein production conditions

21 January 2018

1 reference

https://api.crossref.org/works/10.1042%2FBA20090174

Transcriptomics-based identification of novel factors enhancing heterologous protein secretion in yeasts.

21 January 2018

1 reference

https://api.crossref.org/works/10.1042%2FBA20090174

Engineering of Pichia pastoris for improved production of antibody fragments.

21 January 2018

1 reference

https://api.crossref.org/works/10.1042%2FBA20090174

Effects of inactivation and constitutive expression of the unfolded- protein response pathway on protein production in the yeast Saccharomyces cerevisiae

21 January 2018

1 reference

https://api.crossref.org/works/10.1042%2FBA20090174

Improvement of foreign-protein production in Aspergillus niger var. awamori by constitutive induction of the unfolded-protein response

21 January 2018

1 reference

https://api.crossref.org/works/10.1042%2FBA20090174

The conformational quality of insoluble recombinant proteins is enhanced at low growth temperatures

21 January 2018

1 reference

https://api.crossref.org/works/10.1042%2FBA20090174

A strategy for high-level expression of soluble and functional human interferon alpha as a GST-fusion protein in E. coli

21 January 2018

1 reference

https://api.crossref.org/works/10.1042%2FBA20090174

A step-wise approach significantly enhances protein yield of a rationally-designed agonist antibody fragment in E. coli

21 January 2018

1 reference

https://api.crossref.org/works/10.1042%2FBA20090174

Cloning and expression of the gene encoding phospholipase A1 from Serratia sp. MK1 in Escherichia coli

21 January 2018

1 reference

https://api.crossref.org/works/10.1042%2FBA20090174

Over-production of beta-carotene from metabolically engineered Escherichia coli.

21 January 2018

1 reference

https://api.crossref.org/works/10.1042%2FBA20090174

Connection between gene dosage and protein stability revealed by a high-yield production of recombinant proteins in an E. coli LexA1(Ind-) background

21 January 2018

1 reference

https://api.crossref.org/works/10.1042%2FBA20090174

Fusion tags and chaperone co-expression modulate both the solubility and the inclusion body features of the recombinant CLIPB14 serine protease

21 January 2018

1 reference

https://api.crossref.org/works/10.1042%2FBA20090174

DnaK and DnaJ facilitated the folding process and reduced inclusion body formation of magnesium transporter CorA overexpressed in Escherichia coli.

21 January 2018

1 reference

https://api.crossref.org/works/10.1042%2FBA20090174

Optimisation of production of a domoic acid-binding scFv antibody fragment in Escherichia coli using molecular chaperones and functional immobilisation on a mesoporous silicate support.

21 January 2018

1 reference

https://api.crossref.org/works/10.1042%2FBA20090174

Improvement in the expression of CYP2B6 by co-expression with molecular chaperones GroES/EL in Escherichia coli

21 January 2018

1 reference

https://api.crossref.org/works/10.1042%2FBA20090174

Enhanced solubility of heterologous proteins by fusion expression using stress-induced Escherichia coli protein, Tsf.

21 January 2018

1 reference

https://api.crossref.org/works/10.1042%2FBA20090174

Solubilization of aggregation-prone heterologous proteins by covalent fusion of stress-responsive Escherichia coli protein, SlyD.

21 January 2018

1 reference

https://api.crossref.org/works/10.1042%2FBA20090174

Co-expression of chaperonin GroEL/GroES enhances in vivo folding of yeast mitochondrial aconitase and alters the growth characteristics of Escherichia coli

21 January 2018

1 reference

https://api.crossref.org/works/10.1042%2FBA20090174

Molecular chaperones facilitate the soluble expression of N-acyl-D-amino acid amidohydrolases in Escherichia coli

21 January 2018

1 reference

https://api.crossref.org/works/10.1042%2FBA20090174

Role of the chaperone DnaK in protein solubility and conformational quality in inclusion body-forming Escherichia coli cells

21 January 2018

1 reference

https://api.crossref.org/works/10.1042%2FBA20090174

Broad-host-range plasmid pJB658 can be used for industrial-level production of a secreted host-toxic single-chain antibody fragment in Escherichia coli

21 January 2018

1 reference

https://api.crossref.org/works/10.1042%2FBA20090174

Rapid protein-folding assay using green fluorescent protein

21 January 2018

1 reference

https://api.crossref.org/works/10.1042%2FBA20090174

Flow Cytometric Analysis of Metabolic Stress Effects Due to Recombinant Plasmids and Proteins in Escherichia coli Production Strains

21 January 2018

1 reference

https://api.crossref.org/works/10.1042%2FBA20090174

Stabilizing plasmid copy number to improve recombinant protein production

21 January 2018

1 reference

https://api.crossref.org/works/10.1042%2FBA20090174

21 January 2018

Identifiers

DOI

10.1042/BA20090174

1 reference

release_hyjkjfz7f5gypj66cy5psmgrsq

21 August 2017

Fatcat ID

1 reference

Fatcat

https://api.fatcat.wiki/v0/release/hyjkjfz7f5gypj66cy5psmgrsq

mapped directly with Wikidata item

24 November 2022

based on heuristic

1 reference