DNA dynamically directs its own transcription initiation (Q37519218)

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scientific article published on 05 March 2004

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English	DNA dynamically directs its own transcription initiation	scientific article published on 05 March 2004

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instance of

scholarly article

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stated in

Europe PubMed Central

PMC publication ID

390311

retrieved

20 August 2017

title

DNA dynamically directs its own transcription initiation (English)

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stated in

Europe PubMed Central

PMC publication ID

390311

retrieved

20 August 2017

author

Alan R. Bishop

series ordinal

5

object named as

Alan R Bishop

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Europe PubMed Central

PMC publication ID

390311

retrieved

20 August 2017

Kim Ø. Rasmussen

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3

object named as

Kim O Rasmussen

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stated in

Europe PubMed Central

PMC publication ID

390311

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20 August 2017

author name string

Chu H Choi

series ordinal

1

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Europe PubMed Central

PMC publication ID

390311

retrieved

20 August 2017

George Kalosakas

series ordinal

2

1 reference

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Europe PubMed Central

PMC publication ID

390311

retrieved

20 August 2017

Makoto Hiromura

series ordinal

4

1 reference

stated in

Europe PubMed Central

PMC publication ID

390311

retrieved

20 August 2017

Anny Usheva

series ordinal

6

1 reference

stated in

Europe PubMed Central

PMC publication ID

390311

retrieved

20 August 2017

language of work or name

English

0 references

publication date

5 March 2004

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stated in

Europe PubMed Central

PMC publication ID

390311

retrieved

20 August 2017

published in

Nucleic Acids Research

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stated in

Europe PubMed Central

PMC publication ID

390311

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20 August 2017

volume

32

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Europe PubMed Central

PMC publication ID

390311

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20 August 2017

issue

4

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Europe PubMed Central

PMC publication ID

390311

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20 August 2017

page(s)

1584-1590

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Europe PubMed Central

PMC publication ID

390311

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20 August 2017

cites work

Localization of denaturation bubbles in random DNA sequences

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23 August 2017

Structural basis of transcription initiation: an RNA polymerase holoenzyme-DNA complex

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The role of structure, energy landscape, dynamics, and allostery in the enzymatic function of myoglobin

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Crystal structure of Thermus aquaticus core RNA polymerase at 3.3 A resolution.

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Does TATA matter? A structural exploration of the selectivity determinants in its complexes with TATA box-binding protein

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YY1 transcriptional initiator: protein interactions and association with a DNA site containing unpaired strands

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Crystal structure of a yeast TBP/TATA-box complex

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Sites of predicted stress-induced DNA duplex destabilization occur preferentially at regulatory loci

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23 August 2017

Sequence dependence of hydrogen exchange kinetics in DNA duplexes at the individual base pair level in solution

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Genetic analysis of adeno-associated virus: properties of deletion mutants constructed in vitro and evidence for an adeno-associated virus replication function

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Predicting DNA duplex stability from the base sequence

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23 August 2017

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A structural model of transcription elongation

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DNA opens up--supercoiling and heavy breathing

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NMR studies of conformational states and dynamics of DNA.

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Specificity of the S1 nuclease from Aspergillus oryzae

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14 September 2017

Sequence-dependent DNA structure: tetranucleotide conformational maps

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25 June 2018

TATA-binding protein-independent initiation: YY1, TFIIB, and RNA polymerase II direct basal transcription on supercoiled template DNA.

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Nucleic acid base pair dynamics: the impact of sequence and structure using free-energy calculations.

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2 September 2018

High base pair opening rates in tracts of GC base pairs

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12 December 2020

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Statistical mechanics of a nonlinear model for DNA denaturation

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A detailed interpretation of OH radical footprints in a TBP-DNA complex reveals the role of dynamics in the mechanism of sequence-specific binding

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12 December 2020

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Computer simulation of DNA double-helix dynamics

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PubMed

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12 December 2020

based on heuristic

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Duplex destabilization in superhelical DNA is predicted to occur at specific transcriptional regulatory regions

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PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/15004245

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12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Presence of nonlinear excitations in DNA structure and their relationship to DNA premelting and to drug intercalation

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PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/15004245

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12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Energetics of the strand separation transition in superhelical DNA

1 reference

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PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/15004245

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12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Contributions of the TATA box sequence to rate-limiting steps in transcription initiation by RNA polymerase II

1 reference

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PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/15004245

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Dynamics and thermodynamics of a nonlinear model for DNA denaturation

1 reference

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PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/15004245

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

DNA bends in TATA-binding protein-TATA complexes in solution are DNA sequence-dependent

1 reference

stated in

PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/15004245

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Evidence for functional binding and stable sliding of the TATA binding protein on nonspecific DNA

1 reference

stated in

PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/15004245

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Solitons hiding in DNA and their possible significance in RNA transcription

1 reference

stated in

PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/15004245

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Entropy-driven DNA denaturation

1 reference

stated in

PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/15004245

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Identifiers

DOI

10.1093/NAR/GKH335

1 reference

stated in

Europe PubMed Central

PMC publication ID

390311

retrieved

20 August 2017

PMC publication ID

390311

1 reference

stated in

Europe PubMed Central

PMC publication ID

390311

retrieved

20 August 2017

PubMed publication ID

15004245

1 reference

stated in

Europe PubMed Central

PMC publication ID

390311

retrieved

20 August 2017

ResearchGate publication ID

7708762

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