Alternative splicing and gene duplication differentially shaped the regulation of isochorismate synthase in Populus and Arabidopsis. (Q37465383)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:19996170%20AND%20SRC:MED&resulttype=core&format=json

14 February 2020

title

Alternative splicing and gene duplication differentially shaped the regulation of isochorismate synthase in Populus and Arabidopsis (English)

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:19996170%20AND%20SRC:MED&resulttype=core&format=json

14 February 2020

1 reference

ChEBI release 2020-05-28

1 reference

alternative mRNA splicing, via spliceosome

1 reference

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:19996170%20AND%20SRC:MED&resulttype=core&format=json

14 February 2020

Yinan Yuan

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:19996170%20AND%20SRC:MED&resulttype=core&format=json

14 February 2020

Jeng-Der Chung

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:19996170%20AND%20SRC:MED&resulttype=core&format=json

14 February 2020

Xueyan Fu

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:19996170%20AND%20SRC:MED&resulttype=core&format=json

14 February 2020

Virgil E Johnson

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:19996170%20AND%20SRC:MED&resulttype=core&format=json

14 February 2020

Priya Ranjan

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:19996170%20AND%20SRC:MED&resulttype=core&format=json

14 February 2020

Sarah L Booth

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:19996170%20AND%20SRC:MED&resulttype=core&format=json

14 February 2020

Scott A Harding

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:19996170%20AND%20SRC:MED&resulttype=core&format=json

14 February 2020

language of work or name

English

0 references

publication date

8 December 2009

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:19996170%20AND%20SRC:MED&resulttype=core&format=json

Proceedings of the National Academy of Sciences of the United States of America

14 February 2020

published in

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:19996170%20AND%20SRC:MED&resulttype=core&format=json

14 February 2020

volume

106

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:19996170%20AND%20SRC:MED&resulttype=core&format=json

14 February 2020

issue

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:19996170%20AND%20SRC:MED&resulttype=core&format=json

14 February 2020

page(s)

22020-22025

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:19996170%20AND%20SRC:MED&resulttype=core&format=json

The Sorghum bicolor genome and the diversification of grasses

14 February 2020

cites work

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2790362

Annotating genomes with massive-scale RNA sequencing

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2790362

Genome-wide analyses of alternative splicing in plants: opportunities and challenges.

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2790362

Splign: algorithms for computing spliced alignments with identification of paralogs

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2790362

MEGA: a biologist-centric software for evolutionary analysis of DNA and protein sequences

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2790362

The Physcomitrella Genome Reveals Evolutionary Insights into the Conquest of Land by Plants

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2790362

The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2790362

Alternative splicing of pre-messenger RNAs in plants in the genomic era.

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2790362

The Genome of Black Cottonwood, Populus trichocarpa (Torr. & Gray)

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2790362

Genome-wide analysis of the structural genes regulating defense phenylpropanoid metabolism in Populus.

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2790362

Alternative splicing and RNA selection pressure--evolutionary consequences for eukaryotic genomes

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2790362

The Alternative Splicing Gallery (ASG): bridging the gap between genome and transcriptome

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2790362

Nonsense-mediated mRNA decay: terminating erroneous gene expression

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2790362

The Catharanthus alkaloids: pharmacognosy and biotechnology

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2790362

Phylloquinone, what can we learn from plants?

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2790362

Evidence for the widespread coupling of alternative splicing and nonsense-mediated mRNA decay in humans

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2790362

A Draft Sequence of the Rice Genome (Oryza sativa L. ssp. indica)

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2790362

Isochorismate synthase is required to synthesize salicylic acid for plant defence

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2790362

A metabolic node in action: chorismate-utilizing enzymes in microorganisms

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2790362

Predicting subcellular localization of proteins based on their N-terminal amino acid sequence

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2790362

SA, JA, ethylene, and disease resistance in plants

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2790362

Purification and cDNA cloning of isochorismate synthase from elicited cell cultures of Catharanthus roseus

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2790362

Structural genes for salicylate biosynthesis from chorismate in Pseudomonas aeruginosa

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2790362

9-Cis retinoic acid reduces 1alpha,25-dihydroxycholecalciferol-induced renal calcification by altering vitamin K-dependent gamma-carboxylation of matrix gamma-carboxyglutamic acid protein in A/J male mice

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2790362

Functional genomics analysis of foliar condensed tannin and phenolic glycoside regulation in natural cottonwood hybrids

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2790362

An isochorismate hydroxymutase isogene in Escherichia coli

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2790362

Universal chemical assay for the detection and determination of siderophores

26 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2790362

An update on the nomenclature for the cellulose synthase genes in Populus

26 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2790362

Ozone and nitric oxide induce cGMP-dependent and -independent transcription of defence genes in tobacco

2 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2790362

Characterization and biological function of the ISOCHORISMATE SYNTHASE2 gene of Arabidopsis

2 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2790362

Salicylic acid production in response to biotic and abiotic stress depends on isochorismate in Nicotiana benthamiana

2 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2790362

A plant locus essential for phylloquinone (vitamin K1) biosynthesis originated from a fusion of four eubacterial genes

2 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2790362

Salicylic acid accumulation under O3 exposure is regulated by ethylene in tobacco plants

2 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2790362

DAGchainer: a tool for mining segmental genome duplications and synteny

2 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2790362

Predotar: A tool for rapidly screening proteomes for N-terminal targeting sequences

2 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2790362

Duplication-degeneration as a mechanism of gene fission and the origin of new genes in Drosophila species

2 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2790362

Differential expression of two distinct phenylalanine ammonia-lyase genes in condensed tannin-accumulating and lignifying cells of quaking aspen.

2 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2790362

Salicylic Acid in Rice (Biosynthesis, Conjugation, and Possible Role).

2 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2790362

Salicylic acid induction-deficient mutants of Arabidopsis express PR-2 and PR-5 and accumulate high levels of camalexin after pathogen inoculation.

2 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2790362

Salicylic Acid and its Derivatives in Plants: Medicines, Metabolites and Messenger Molecules

2 September 2018

1 reference

Crossref

https://api.crossref.org/works/10.1073%2FPNAS.0906869106

Biosynthesis of anthraquinones in cell cultures of the Rubiaceae

21 January 2018

1 reference

Crossref

https://api.crossref.org/works/10.1073%2FPNAS.0906869106

Salicylate and catechol levels are maintained in nahG transgenic poplar

21 January 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/19996170

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Ozone sensitivity in hybrid poplar correlates with insensitivity to both salicylic acid and jasmonic acid. The role of programmed cell death in lesion formation

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/19996170

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Deficiency in phylloquinone (vitamin K1) methylation affects prenyl quinone distribution, photosystem I abundance, and anthocyanin accumulation in the Arabidopsis AtmenG mutant

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/19996170

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1073/PNAS.0906869106

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:19996170%20AND%20SRC:MED&resulttype=core&format=json

14 February 2020

0 references

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:19996170%20AND%20SRC:MED&resulttype=core&format=json

14 February 2020

PubMed publication ID

19996170

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:19996170%20AND%20SRC:MED&resulttype=core&format=json