A survey of PPR proteins identifies DYW domains like those of land plant RNA editing factors in diverse eukaryotes. (Q37381247)

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6 March 2020

title

A survey of PPR proteins identifies DYW domains like those of land plant RNA editing factors in diverse eukaryotes (English)

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6 March 2020

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6 March 2020

author name string

Mareike Schallenberg-Rüdinger

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6 March 2020

Monika Polsakiewicz

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6 March 2020

Jonatha M Gott

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6 March 2020

Volker Knoop

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6 March 2020

publication date

16 July 2013

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6 March 2020

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6 March 2020

volume

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6 March 2020

issue

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6 March 2020

page(s)

1549-1556

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Elucidation of the RNA recognition code for pentatricopeptide repeat proteins involved in organelle RNA editing in plants

6 March 2020

cites work

1 reference

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6 September 2017

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CDD: conserved domains and protein three-dimensional structure

6 September 2017

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A combinatorial amino acid code for RNA recognition by pentatricopeptide repeat proteins.

6 September 2017

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Mechanistic insight into pentatricopeptide repeat proteins as sequence-specific RNA-binding proteins for organellar RNAs in plants

6 September 2017

1 reference

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RIP1, a member of an Arabidopsis protein family, interacts with the protein RARE1 and broadly affects RNA editing

6 September 2017

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A full suite of histone and histone modifying genes are transcribed in the dinoflagellate Lingulodinium

6 September 2017

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Multiple organellar RNA editing factor (MORF) family proteins are required for RNA editing in mitochondria and plastids of plants

6 September 2017

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6 September 2017

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Broad phylogenomic sampling and the sister lineage of land plants

6 September 2017

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Plant-type mitochondrial RNA editing in the protist Naegleria gruberi

6 September 2017

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6 September 2017

Organellar RNA editing

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Evolution of the deaminase fold and multiple origins of eukaryotic editing and mutagenic nucleic acid deaminases from bacterial toxin systems

6 September 2017

1 reference

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The evolution of RNA editing and pentatricopeptide repeat genes.

6 September 2017

1 reference

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Complete characterization of the edited transcriptome of the mitochondrion of Physarum polycephalum using deep sequencing of RNA.

6 September 2017

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When you can’t trust the DNA: RNA editing changes transcript sequences

6 September 2017

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The Genome of Naegleria gruberi Illuminates Early Eukaryotic Versatility

6 September 2017

1 reference

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Transcriptomic changes arising during light-induced sporulation in Physarum polycephalum

6 September 2017

1 reference

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Desiccation survival in an Antarctic nematode: molecular analysis using expressed sequenced tags

6 September 2017

1 reference

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Pentatricopeptide repeat proteins: a socket set for organelle gene expression.

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3858438

Massive Horizontal Gene Transfer in Bdelloid Rotifers

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3858438

On the expansion of the pentatricopeptide repeat gene family in plants

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3858438

TPRpred: a tool for prediction of TPR-, PPR- and SEL1-like repeats from protein sequences

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3858438

Unexpectedly complex editing patterns at dinucleotide insertion sites in Physarum mitochondria

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3858438

Genome-wide analysis of Arabidopsis pentatricopeptide repeat proteins reveals their essential role in organelle biogenesis

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3858438

WebLogo: A Sequence Logo Generator

6 September 2017

1 reference

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Collodictyon triciliatum and Diphylleia rotans (=Aulacomonas submarina) form a new family of flagellates (Collodictyonidae) with tubular mitochondrial cristae that is phylogenetically distant from other flagellate groups

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3858438

The PPR motif - a TPR-related motif prevalent in plant organellar proteins

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3858438

Rooting the eukaryotic tree with mitochondrial and bacterial proteins

6 September 2017

1 reference

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Substitutional and insertional RNA editing of the cytochrome c oxidase subunit 1 mRNA of Physarum polycephalum

14 September 2017

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PREPACT 2.0: Predicting C-to-U and U-to-C RNA Editing in Organelle Genome Sequences with Multiple References and Curated RNA Editing Annotation.

26 June 2018

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Nuclear DYW-type PPR gene families diversify with increasing RNA editing frequencies in liverwort and moss mitochondria

2 September 2018

1 reference

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Revisiting the yeast PPR proteins--application of an Iterative Hidden Markov Model algorithm reveals new members of the rapidly evolving family

2 September 2018

1 reference

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DYW-type PPR proteins in a heterolobosean protist: plant RNA editing factors involved in an ancient horizontal gene transfer?

2 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3858438

Malawimonas jakobiformis n. gen., n. sp. (Malawimonadidae n. fam.): A Jakoba-like Heterotrophic Nanoflagellate with Discoidal Mitochondrial Cristae

2 September 2018

1 reference

Crossref

https://api.crossref.org/works/10.4161%2FRNA.25755

A hypothesis on the identification of the editing enzyme in plant organelles

21 January 2018

1 reference

Crossref

https://api.crossref.org/works/10.4161%2FRNA.25755

21 January 2018

Identifiers

DOI

10.4161/RNA.25755

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23899506%20AND%20SRC:MED&resulttype=core&format=json

6 March 2020

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6 March 2020

PubMed publication ID

23899506

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23899506%20AND%20SRC:MED&resulttype=core&format=json