Comparative analysis of editosome proteins in trypanosomatids (Q37371527)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:14602897%20AND%20SRC:MED&resulttype=core&format=json

20 December 2019

title

Comparative analysis of editosome proteins in trypanosomatids (English)

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:14602897%20AND%20SRC:MED&resulttype=core&format=json

RNA-editing complex protein MP100, putative

20 December 2019

main subject

1 reference

GeneDB

RNA-editing complex protein MP100, putative

5 February 2019

0 references

Trypanosomatidae

object named as

trypanosomatids

1 reference

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:14602897%20AND%20SRC:MED&resulttype=core&format=json

20 December 2019

Elizabeth A Worthey

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:14602897%20AND%20SRC:MED&resulttype=core&format=json

20 December 2019

I Saira Mian

series ordinal

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:14602897%20AND%20SRC:MED&resulttype=core&format=json

20 December 2019

Kenneth Stuart

series ordinal

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:14602897%20AND%20SRC:MED&resulttype=core&format=json

20 December 2019

Reza Salavati

series ordinal

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:14602897%20AND%20SRC:MED&resulttype=core&format=json

20 December 2019

language of work or name

English

0 references

publication date

1 November 2003

1 reference

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20 December 2019

number of pages

1 reference

inferred from page(s)

published in

Nucleic Acids Research

1 reference

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20 December 2019

volume

1 reference

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20 December 2019

issue

1 reference

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20 December 2019

page(s)

6392-6408

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:14602897%20AND%20SRC:MED&resulttype=core&format=json

20 December 2019

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6 September 2017

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6 September 2017

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6 September 2017

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Structure of the gene 2.5 protein, a single-stranded DNA binding protein encoded by bacteriophage T7

6 September 2017

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Two divalent metal ions in the active site of a new crystal form of human apurinic/apyrimidinic endonuclease, Ape1: implications for the catalytic mechanism

6 September 2017

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6 September 2017

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6 September 2017

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6 September 2017

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6 September 2017

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Crystal structure of eukaryotic DNA ligase-adenylate illuminates the mechanism of nick sensing and strand joining

6 September 2017

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6 September 2017

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6 September 2017

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6 September 2017

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6 September 2017

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6 September 2017

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6 September 2017

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6 September 2017

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6 September 2017

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6 September 2017

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6 September 2017

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6 September 2017

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Mutational analysis of Escherichia coli DNA ligase identifies amino acids required for nick-ligation in vitro and for in vivo complementation of the growth of yeast cells deleted for CDC9 and LIG4

6 September 2017

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Structure-based mutagenesis study of hepatitis C virus NS3 helicase

6 September 2017

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6 September 2017

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6 September 2017

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Conserved domains in DNA repair proteins and evolution of repair systems

6 September 2017

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Identification and characterization of the fourth single-stranded-DNA binding domain of replication protein A

6 September 2017

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6 September 2017

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Elements in abasic site recognition by the major human and Escherichia coli apurinic/apyrimidinic endonucleases

6 September 2017

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Agrobacterium transcriptional regulator Ros is a prokaryotic zinc finger protein that regulates the plant oncogene ipt

6 September 2017

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U-insertion/deletion Edited Sequence Database

6 September 2017

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Genetic interactions of conserved regions in the DEAD-box protein Prp28p

6 September 2017

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The mechanism of U insertion/deletion RNA editing in kinetoplastid mitochondria

6 September 2017

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Crystal Structures of Human DNA Polymerase β Complexed with Gapped and Nicked DNA: Evidence for an Induced Fit Mechanism,

6 September 2017

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6 September 2017

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Comparative sequence analysis of ribonucleases HII, III, II PH and D

6 September 2017

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Regulation of second messengers by the inositol polyphosphate 5-phosphatases

6 September 2017

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A minimal gene set for cellular life derived by comparison of complete bacterial genomes

6 September 2017

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6 September 2017

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Active site comparisons highlight structural similarities between myosin and other P-loop proteins

6 September 2017

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Crystal structure of an ATP-dependent DNA ligase from bacteriophage T7

6 September 2017

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Mechanism and evolution of RNA editing in kinetoplastida

6 September 2017

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Homodimerization of the human U1 snRNP-specific protein C

6 September 2017

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Identification of functional domains in the Sep1 protein (= Kem1, Xrn1), which is required for transition through meiotic prophase in Saccharomyces cerevisiae

6 September 2017

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OB(oligonucleotide/oligosaccharide binding)-fold: common structural and functional solution for non-homologous sequences

6 September 2017

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Hidden Markov models in computational biology. Applications to protein modeling

6 September 2017

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Interactions between highly conserved U2 small nuclear RNA structures and Prp5p, Prp9p, Prp11p, and Prp21p proteins are required to ensure integrity of the U2 small nuclear ribonucleoprotein in Saccharomyces cerevisiae

6 September 2017

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CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice

6 September 2017

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Escherichia coli single-stranded DNA-binding protein: multiple DNA-binding modes and cooperativities

6 September 2017

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Structure and function of the multifunctional DNA-repair enzyme exonuclease III

6 September 2017

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Two functionally distinct RNA-binding motifs in the regulatory domain of the protein kinase DAI

6 September 2017

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Structure and function of the UvrB protein

6 September 2017

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Sequences of the ssb gene and protein

6 September 2017

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Structure refined to 2Å of a nicked DNA octanucleotide complex with DNase I

6 September 2017

1 reference

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The presence of malfolded proteins in the endoplasmic reticulum signals the induction of glucose-regulated proteins

6 September 2017

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ATP-binding site of adenylate kinase: mechanistic implications of its homology with ras-encoded p21, F1-ATPase, and other nucleotide-binding proteins

6 September 2017

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6 September 2017

Birth of the D-E-A-D box

1 reference

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Developmental aspects of uridine addition within mitochondrial transcripts of Trypanosoma brucei

6 September 2017

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The MURF3 gene of T. brucei contains multiple domains of extensive editing and is homologous to a subunit of NADH dehydrogenase

6 September 2017

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The P-loop--a common motif in ATP- and GTP-binding proteins

6 September 2017

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The single-stranded DNA-binding protein of Escherichia coli

6 September 2017

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Translation initiation factor 4A from Saccharomyces cerevisiae: analysis of residues conserved in the D-E-A-D family of RNA helicases

6 September 2017

1 reference

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Cloning and expression of APE, the cDNA encoding the major human apurinic endonuclease: definition of a family of DNA repair enzymes

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=275564

The cleavage specificity of RNase III.

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=275564

Repair of intrinsic DNA lesions

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=275564

A model for RNA editing in kinetoplastid mitochondria: "guide" RNA molecules transcribed from maxicircle DNA provide the edited information

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=275564

Characterization of DNA-binding and strand-exchange stimulation properties of y-RPA, a yeast single-strand-DNA-binding protein

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=275564

Mutational analysis of a DEAD box RNA helicase: the mammalian translation initiation factor eIF-4A

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=275564

Mitochondrial DNA of kinetoplastids

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=275564

Fluorescence and chemical studies on the interaction of Escherichia coli DNA-binding protein with single-stranded DNA

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=275564

Distinct functions of two RNA ligases in active Trypanosoma brucei RNA editing complexes.

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=275564

TbMP81 is required for RNA editing in Trypanosoma brucei

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=275564

Mapping contacts between gRNA and mRNA in trypanosome RNA editing.

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=275564

Apurinic/apyrimidinic endonuclease genes from the trypanosomatidae leishmania major and Trypanosoma cruzi confer resistance to oxidizing agents in DNA repair-deficient Escherichia coli

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=275564

Mutational analysis of Chlorella virus DNA ligase: catalytic roles of domain I and motif VI.

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=275564

Specificity and fidelity of strand joining by Chlorella virus DNA ligase

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=275564

Processing of polycistronic guide RNAs is associated with RNA editing complexes in Trypanosoma brucei

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=275564

Disruption of a Gene Encoding a Novel Mitochondrial DEAD-Box Protein in Trypanosoma brucei Affects Edited mRNAs

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=275564

Uridine insertion into preedited mRNA by a mitochondrial extract from Leishmania tarentolae: stereochemical evidence for the enzyme cascade model

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=275564

The QRxGRxGRxxxG motif of the vaccinia virus DExH box RNA helicase NPH-II is required for ATP hydrolysis and RNA unwinding but not for RNA binding

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=275564

The HRIGRXXR region of the DEAD box RNA helicase eukaryotic translation initiation factor 4A is required for RNA binding and ATP hydrolysis

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=275564

Developmental regulation of mitochondrial biogenesis in Trypanosoma brucei

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=275564

DNA recognition by DNase I.

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=275564

Structure and function of apurinic/apyrimidinic endonucleases.

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=275564

Trypanosoma bruceimitochondria contain RNA helicase activity

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=275564

Nucleotide excision repair, a tracking mechanism in search of damage

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=275564

Identification of novel components of Trypanosoma brucei editosomes

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=275564

Endoribonuclease activities of Trypanosoma brucei mitochondria.

26 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=275564

The role of the 6 lysines and the terminal amine of Escherichia coli single-strand binding protein in its binding of single-stranded DNA

26 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=275564

Analysis of zinc binding sites in protein crystal structures

26 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=275564

The crystal structure of the human DNA repair endonuclease HAP1 suggests the recognition of extra-helical deoxyribose at DNA abasic sites

26 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=275564

Resolution of the RNA editing gRNA-directed endonuclease from two other endonucleases of Trypanosoma brucei mitochondria.

26 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=275564

Single-stranded-DNA-binding proteins from human mitochondria and Escherichia coli have analogous physicochemical properties.

26 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=275564

Evolution of RNA editing in kinetoplastid protozoa

26 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=275564

Solid-phase sequence analysis of polypeptides eluted from polyacrylamide gels. An aid to interpretation of DNA sequences exemplified by the Escherichia coli unc operon and bacteriophage lambda

26 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=275564

Two binding modes in Escherichia coli single strand binding protein-single stranded DNA complexes. Modulation by NaCl concentration.

26 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=275564

Active site of (A)BC excinuclease. II. Binding, bending, and catalysis mutants of UvrB reveal a direct role in 3' and an indirect role in 5' incision

26 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=275564

Separate insertion and deletion subcomplexes of the Trypanosoma brucei RNA editing complex.

26 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=275564

TbMP57 is a 3' terminal uridylyl transferase (TUTase) of the Trypanosoma brucei editosome

2 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=275564

Structure-function analysis of T4 RNA ligase 2.

2 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=275564

A regulatory cytoplasmic poly(A) polymerase in Caenorhabditis elegans

2 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=275564

Determinants in nuclease specificity of Ape1 and Ape2, human homologues of Escherichia coli exonuclease III.

2 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=275564

An RNA ligase essential for RNA editing and survival of the bloodstream form of Trypanosoma brucei

2 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=275564

The evolutionary expansion of the trypanosomatid flagellates

2 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=275564

Four yeast spliceosomal proteins (PRP5, PRP9, PRP11, and PRP21) interact to promote U2 snRNP binding to pre-mRNA

2 September 2018

1 reference

12 December 2020

What's old is new: an alternative DNA excision repair pathway

1 reference

12 December 2020

The activity of the Saccharomyces cerevisiae strand exchange protein 1 intrinsic exonuclease during joint molecule formation

1 reference

12 December 2020

Mutational Analysis of Vaccinia DNA Ligase Defines Residues Essential for Covalent Catalysis

1 reference

12 December 2020

DNA structural variations in the E. coli tyrT promoter

1 reference

12 December 2020

Developmentally regulated addition of nucleotides within apocytochrome b transcripts in Trypanosoma brucei

1 reference

12 December 2020

A mutation in E. coli SSB protein (W54S) alters intra-tetramer negative cooperativity and inter-tetramer positive cooperativity for single-stranded DNA binding

1 reference

12 December 2020

Functional domains of an ATP-dependent DNA ligase

1 reference

12 December 2020

Kinetoplastid RNA editing ligases: complex association, characterization, and substrate requirements

1 reference

12 December 2020

Identifiers

DOI

10.1093/NAR/GKG870

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:14602897%20AND%20SRC:MED&resulttype=core&format=json

20 December 2019

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:14602897%20AND%20SRC:MED&resulttype=core&format=json

20 December 2019

PubMed publication ID

14602897

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:14602897%20AND%20SRC:MED&resulttype=core&format=json