Phenotypic clustering: a novel method for microglial morphology analysis (Q37018119)

17 August 2017

Phenotypic clustering: a novel method for microglial morphology analysis (English)

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17 August 2017

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Spencer L Shorte

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Fernando A Bozza

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17 August 2017

Sébastien Simard

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17 August 2017

Franck Verdonk

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17 August 2017

Pascal Roux

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17 August 2017

Patricia Flamant

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17 August 2017

Laurence Fiette

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17 August 2017

Marc Lemaire

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17 August 2017

Benoit Plaud

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17 August 2017

Tarek Sharshar

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17 August 2017

Fabrice Chrétien

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17 August 2017

Anne Danckaert

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17 August 2017

17 June 2016

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Journal of Neuroinflammation

17 August 2017

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17 August 2017

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17 August 2017

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17 August 2017

153

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describes a project that uses

17 August 2017

ImageJ

1 reference

11 June 2022

https://www.ebi.ac.uk/europepmc/webservices/rest/PMC4912769/fullTextXML

inferred from PubMed Central ID database lookup

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TAM receptors regulate multiple features of microglial physiology

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A postnatal peak in microglial development in the mouse hippocampus is correlated with heightened sensitivity to seizure triggers

29 September 2017

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Altered morphological dynamics of activated microglia after induction of status epilepticus

29 September 2017

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A combined cumulative threshold spectra and digital reconstruction analysis reveal structural alterations of microglia within the prefrontal cortex following low-dose LPS administration.

29 September 2017

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IL-17A is implicated in lipopolysaccharide-induced neuroinflammation and cognitive impairment in aged rats via microglial activation

29 September 2017

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Resident microglia, rather than blood-derived macrophages, contribute to the earlier and more pronounced inflammatory reaction in the immature compared with the adult hippocampus after hypoxia-ischemia

29 September 2017

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The induction of neuronal death by up-regulated microglial cathepsin H in LPS-induced neuroinflammation

29 September 2017

1 reference

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Quantitative assessment of microglial morphology and density reveals remarkable consistency in the distribution and morphology of cells within the healthy prefrontal cortex of the rat.

29 September 2017

1 reference

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Activation of neuronal NMDA receptors triggers transient ATP-mediated microglial process outgrowth.

29 September 2017

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Accelerated microglial pathology is associated with Aβ plaques in mouse models of Alzheimer's disease

29 September 2017

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Microglia receptors and their implications in the response to amyloid β for Alzheimer's disease pathogenesis

29 September 2017

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Morphometric characterization of microglial phenotypes in human cerebral cortex

29 September 2017

1 reference

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Transcriptome in vivo analysis (TIVA) of spatially defined single cells in live tissue

29 September 2017

1 reference

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Acute and chronic stress-induced disturbances of microglial plasticity, phenotype and function

29 September 2017

1 reference

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Cellular and molecular mediators of neuroinflammation in the pathogenesis of Parkinson's disease

29 September 2017

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Quantitating the subtleties of microglial morphology with fractal analysis

29 September 2017

1 reference

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Microglia: scapegoat, saboteur, or something else?

29 September 2017

1 reference

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Microglial activation in the injured and healthy brain: what are we really talking about? Practical and theoretical issues associated with the measurement of changes in microglial morphology

29 September 2017

1 reference

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Fiji: an open-source platform for biological-image analysis

29 September 2017

1 reference

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Real-time analysis of microglial activation and motility in hepatic and hyperammonemic encephalopathy

29 September 2017

1 reference

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An automated method to quantify microglia morphology and application to monitor activation state longitudinally in vivo

29 September 2017

1 reference

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OMERO: flexible, model-driven data management for experimental biology

29 September 2017

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Temporal pattern of expression and colocalization of microglia/macrophage phenotype markers following brain ischemic injury in mice

29 September 2017

1 reference

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Regional difference in inflammatory response to LPS-injection in the brain: role of microglia cell density.

29 September 2017

1 reference

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Synaptic pruning by microglia is necessary for normal brain development

29 September 2017

1 reference

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29 September 2017

Physiology of microglia

1 reference

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Microglial interactions with synapses are modulated by visual experience

29 September 2017

1 reference

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Cellular heterogeneity: do differences make a difference?

29 September 2017

1 reference

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Microglia: biology and pathology

29 September 2017

1 reference

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Globally optimal stitching of tiled 3D microscopic image acquisitions

29 September 2017

1 reference

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The brain expression of genes involved in inflammatory response, the ribosome, and learning and memory is altered by centrally injected lipopolysaccharide in mice

29 September 2017

1 reference

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Microglia: active sensor and versatile effector cells in the normal and pathologic brain

29 September 2017

1 reference

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Systemic infections and inflammation affect chronic neurodegeneration

29 September 2017

1 reference

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Systemic LPS causes chronic neuroinflammation and progressive neurodegeneration

29 September 2017

1 reference

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Microglia-mediated neurotoxicity: uncovering the molecular mechanisms

29 September 2017

1 reference

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Visualization of microglia in living tissues using Iba1-EGFP transgenic mice

29 September 2017

1 reference

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ATP mediates rapid microglial response to local brain injury in vivo

29 September 2017

1 reference

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Resting microglial cells are highly dynamic surveillants of brain parenchyma in vivo

29 September 2017

1 reference

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IGF-I instructs multipotent adult neural progenitor cells to become oligodendrocytes

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4912769

Analysis of fractalkine receptor CX(3)CR1 function by targeted deletion and green fluorescent protein reporter gene insertion

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4912769

Microglia-specific localisation of a novel calcium binding protein, Iba1

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4912769

3D reconstruction of histological sections: Application to mammary gland tissue

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4912769

Heterogeneity in the distribution and morphology of microglia in the normal adult mouse brain

27 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4912769

TNF and increased intracellular iron alter macrophage polarization to a detrimental M1 phenotype in the injured spinal cord

27 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4912769

Layer V cortical neurons require microglial support for survival during postnatal development.

4 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4912769

Multistage histopathological image segmentation of Iba1-stained murine microglias in a focal ischemia model: methodological workflow and expert validation

4 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4912769

Toll-like receptor activation reveals developmental reorganization and unmasks responder subsets of microglia

4 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4912769

Chronic stress induced remodeling of the prefrontal cortex: structural re-organization of microglia and the inhibitory effect of minocycline.

4 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4912769

Automated analysis of neurite branching in cultured cortical neurons using HCA-Vision.

4 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4912769

Microglia promote the death of developing Purkinje cells

4 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4912769

Dynamics of microglial activation: a confocal time-lapse analysis in hippocampal slices

4 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4912769

Morphology of reactive microglia in the injured cerebral cortex. Fractal analysis and complementary quantitative methods

4 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4912769

Early axonal and glial pathology in fetal sheep brains with leukomalacia induced by repeated umbilical cord occlusion

4 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4912769

Regional difference in susceptibility to lipopolysaccharide-induced neurotoxicity in the rat brain: role of microglia

4 September 2018

1 reference

12 December 2020

Enhanced expression of Iba1, ionized calcium-binding adapter molecule 1, after transient focal cerebral ischemia in rat brain

1 reference

12 December 2020

Identifying sub-populations via unsupervised cluster analysis on multi-edge similarity graphs

1 reference

12 December 2020

Microglia regulate hippocampal neurogenesis during chronic neurodegeneration

1 reference

12 December 2020

Morphology and distribution of microglial cells in the young and adult mouse cerebellum

1 reference

12 December 2020

10.1186/S12974-016-0614-7

Identifiers

DOI

1 reference

Dimensions Publication ID

17 August 2017

0 references

1 reference

17 August 2017

PubMed publication ID

27317566

1 reference