The impact of the neisserial DNA uptake sequences on genome evolution and stability (Q36678612)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:18366792%20AND%20SRC:MED&resulttype=core&format=json

4 January 2020

title

The impact of the neisserial DNA uptake sequences on genome evolution and stability (English)

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4 January 2020

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4 January 2020

1 reference

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4 January 2020

1 reference

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4 January 2020

Todd J Treangen

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4 January 2020

publication date

26 March 2008

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4 January 2020

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4 January 2020

volume

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4 January 2020

issue

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4 January 2020

page(s)

R60

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Recent advances in understanding of the evolution and maintenance of sex

4 January 2020

cites work

1 reference

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Genome dynamics of short oligonucleotides: the example of bacterial DNA uptake enhancing sequences

30 September 2017

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Characterization and modeling of the Haemophilus influenzae core and supragenomes based on the complete genomic sequences of Rd and 12 clinical nontypeable strains

30 September 2017

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Locating proteins in the cell using TargetP, SignalP and related tools

30 September 2017

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Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake

30 September 2017

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Meningococcal genetic variation mechanisms viewed through comparative analysis of serogroup C strain FAM18.

30 September 2017

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Conquering the meningococcus

30 September 2017

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30 September 2017

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The maintenance of sex in bacteria is ensured by its potential to reload genes.

30 September 2017

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M-GCAT: interactively and efficiently constructing large-scale multiple genome comparison frameworks in closely related species

30 September 2017

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Interference among deleterious mutations favours sex and recombination in finite populations

30 September 2017

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The obligate human pathogen, Neisseria gonorrhoeae, is polyploid

30 September 2017

1 reference

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Natural transformation of Neisseria gonorrhoeae: from DNA donation to homologous recombination

30 September 2017

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Meningococcal genome dynamics.

30 September 2017

1 reference

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Comparisons of dN/dS are time dependent for closely related bacterial genomes

30 September 2017

1 reference

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Mechanisms of, and barriers to, horizontal gene transfer between bacteria

30 September 2017

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Can Neisseria lactamica antigens provide an effective vaccine to prevent meningococcal disease?

30 September 2017

1 reference

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Intracellular protein and DNA dynamics in competent Bacillus subtilis cells

30 September 2017

1 reference

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Transformation proteins and DNA uptake localize to the cell poles in Bacillus subtilis

30 September 2017

1 reference

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Genomic Sequence of an Otitis Media Isolate of Nontypeable Haemophilus influenzae: Comparative Study with H. influenzae Serotype d, Strain KW20

30 September 2017

1 reference

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A chromosomally integrated bacteriophage in invasive meningococci

30 September 2017

1 reference

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Competence-programmed predation of noncompetent cells in the human pathogen Streptococcus pneumoniae: genetic requirements

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2397512

The molecular mechanisms used by Neisseria gonorrhoeae to initiate infection differ between men and women

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2397512

WebLogo: A Sequence Logo Generator

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2397512

DNA uptake during bacterial transformation

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2397512

Evolutionary stability of DNA uptake signal sequences in the Pasteurellaceae

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2397512

MUSCLE: multiple sequence alignment with high accuracy and high throughput

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2397512

Biased distribution of DNA uptake sequences towards genome maintenance genes

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2397512

Competence-induced cells of Streptococcus pneumoniae lyse competence-deficient cells of the same strain during cocultivation

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2397512

Acquired macrolide resistance genes in pathogenic Neisseria spp. isolated between 1940 and 1987.

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2397512

Extensive repetitive DNA facilitates prokaryotic genome plasticity

30 September 2017

1 reference

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HGT-DB: a database of putative horizontally transferred genes in prokaryotic complete genomes

30 September 2017

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Recombination in evolutionary genomics

30 September 2017

1 reference

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Genome analysis and strain comparison of correia repeats and correia repeat-enclosed elements in pathogenic Neisseria

30 September 2017

1 reference

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Origin and fate of repeats in bacteria

30 September 2017

1 reference

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Specialized DNA polymerases, cellular survival, and the genesis of mutations

30 September 2017

1 reference

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Mutator clones of Neisseria meningitidis in epidemic serogroup A disease

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2397512

TREE-PUZZLE: maximum likelihood phylogenetic analysis using quartets and parallel computing

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2397512

30 September 2017

Do bacteria have sex?

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2397512

Sexual isolation in bacteria

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2397512

Complete DNA sequence of a serogroup A strain of Neisseria meningitidis Z2491

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2397512

Selection of conserved blocks from multiple alignments for their use in phylogenetic analysis

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2397512

Molecular and biological analysis of eight genetic islands that distinguish Neisseria meningitidis from the closely related pathogen Neisseria gonorrhoeae

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2397512

Complete Genome Sequence of Neisseria meningitidis Serogroup B Strain MC58

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2397512

DNA uptake signal sequences in naturally transformable bacteria

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2397512

The relative contributions of recombination and mutation to the divergence of clones of Neisseria meningitidis

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2397512

30 September 2017

DNA uptake in bacteria

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2397512

Natural genetic exchange between Haemophilus and Neisseria: intergeneric transfer of chromosomal genes between major human pathogens

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2397512

Why sex and recombination?

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2397512

BIONJ: an improved version of the NJ algorithm based on a simple model of sequence data

30 September 2017

1 reference

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Common themes in microbial pathogenicity revisited

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2397512

DNA repeats identify novel virulence genes in Haemophilus influenzae

30 September 2017

1 reference

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DNA repair and the evolution of transformation in the bacterium Bacillus subtilis

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2397512

30 September 2017

How clonal are bacteria?

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2397512

Evolution of natural transformation: testing the DNA repair hypothesis in Bacillus subtilis and Haemophilus influenzae

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2397512

Bacterial gene transfer by natural genetic transformation in the environment

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2397512

Adaptive evolution of highly mutable loci in pathogenic bacteria

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2397512

Construction of DNA recognition sites active in Haemophilus transformation

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2397512

Specificity in Deoxyribonucleic Acid Uptake by Transformable Haemophilus influenzae

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2397512

Identification and arrangement of the DNA sequence recognized in specific transformation of Neisseria gonorrhoeae

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2397512

Factors influencing the specific interaction of Neisseria gonorrhoeae with transforming DNA

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2397512

Evidence for horizontal gene transfer in Escherichia coli speciation

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2397512

DNA repair and the evolution of transformation in Haemophilus influenzae

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2397512

Factors affecting genetic transformation of Neisseria gonorrhoeae

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2397512

New functional identity for the DNA uptake sequence in transformation and its presence in transcriptional terminators

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2397512

Microarray analysis of the Bacillus subtilis K-state: genome-wide expression changes dependent on ComK.

28 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2397512

The length of a tetranucleotide repeat tract in Haemophilus influenzae determines the phase variation rate of a gene with homology to type III DNA methyltransferases.

28 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2397512

The opcA and (psi)opcB regions in Neisseria: genes, pseudogenes, deletions, insertion elements and DNA islands

28 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2397512

DNA repair profiles of disease-associated isolates of Neisseria meningitidis.

28 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2397512

Complete and variant forms of the 'gonococcal genetic island' in Neisseria meningitidis.

5 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2397512

Evaluation of the current models for the evolution of bacterial DNA uptake signal sequences

5 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2397512

Bistability in the Bacillus subtilis K-state (competence) system requires a positive feedback loop

5 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2397512

Neisseria gonorrhoeae secretes chromosomal DNA via a novel type IV secretion system

5 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2397512

The influence of mutation, recombination, population history, and selection on patterns of genetic diversity in Neisseria meningitidis

5 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2397512

Base composition bias might result from competition for metabolic resources.

5 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2397512

Hypermutation in pathogenic bacteria: frequent phase variation in meningococci is a phenotypic trait of a specialized mutator biotype.

5 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2397512

Statistical tests for detecting gene conversion.

5 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2397512

Comparative genomics of Neisseria meningitidis: core genome, islands of horizontal transfer and pathogen-specific genes

5 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2397512

Multiple interactions among the competence proteins of Bacillus subtilis

4 December 2018

1 reference

12 December 2020

Repeat-associated phase variable genes in the complete genome sequence of Neisseria meningitidis strain MC58

1 reference

12 December 2020

Frequency and distribution of DNA uptake signal sequences in the Haemophilus influenzae Rd genome

1 reference

12 December 2020

Plastic cells and populations: DNA substrate characteristics in Helicobacter pylori transformation define a flexible but conservative system for genomic variation

1 reference

12 December 2020

Localized sex in bacteria

1 reference

12 December 2020

Identifiers

DOI

10.1186/GB-2008-9-3-R60

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:18366792%20AND%20SRC:MED&resulttype=core&format=json

Dimensions Publication ID

4 January 2020

0 references

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:18366792%20AND%20SRC:MED&resulttype=core&format=json

4 January 2020

PubMed publication ID

18366792

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:18366792%20AND%20SRC:MED&resulttype=core&format=json