QuShape: rapid, accurate, and best-practices quantification of nucleic acid probing information, resolved by capillary electrophoresis (Q36481235)

14 August 2017

QuShape: rapid, accurate, and best-practices quantification of nucleic acid probing information, resolved by capillary electrophoresis (English)

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14 August 2017

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Fethullah Karabiber

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14 August 2017

Jennifer L McGinnis

series ordinal

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14 August 2017

Oleg V Favorov

series ordinal

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14 August 2017

Kevin M Weeks

series ordinal

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14 August 2017

language of work or name

English

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publication date

27 November 2012

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14 August 2017

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14 August 2017

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14 August 2017

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14 August 2017

63-73

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describes a project that uses

14 August 2017

capillary electrophoresis

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based on heuristic

inferred from title

cites work

Evaluating our ability to predict the structural disruption of RNA by SNPs

1 reference

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The mechanisms of RNA SHAPE chemistry

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3527727

Femtomole SHAPE reveals regulatory structures in the authentic XMRV RNA genome

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3527727

Simplified RNA secondary structure mapping by automation of SHAPE data analysis

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3527727

RNA structure probing dash seq

30 September 2017

1 reference

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Modeling and automation of sequencing-based characterization of RNA structure

30 September 2017

1 reference

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Multiplexed RNA structure characterization with selective 2'-hydroxyl acylation analyzed by primer extension sequencing (SHAPE-Seq)

30 September 2017

1 reference

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Definition of a high-affinity Gag recognition structure mediating packaging of a retroviral RNA genome.

30 September 2017

1 reference

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High-throughput SHAPE and hydroxyl radical analysis of RNA structure and ribonucleoprotein assembly

30 September 2017

1 reference

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Advances in RNA structure analysis by chemical probing

30 September 2017

1 reference

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Architecture and secondary structure of an entire HIV-1 RNA genome

30 September 2017

1 reference

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Influence of nucleotide identity on ribose 2'-hydroxyl reactivity in RNA

30 September 2017

1 reference

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Accurate SHAPE-directed RNA structure determination

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3527727

ShapeFinder: a software system for high-throughput quantitative analysis of nucleic acid reactivity information resolved by capillary electrophoresis

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3527727

High-throughput single-nucleotide structural mapping by capillary automated footprinting analysis

30 September 2017

1 reference

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High-throughput SHAPE analysis reveals structures in HIV-1 genomic RNA strongly conserved across distinct biological states

30 September 2017

1 reference

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Selective 2'-hydroxyl acylation analyzed by primer extension (SHAPE): quantitative RNA structure analysis at single nucleotide resolution

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3527727

RNA structure analysis at single nucleotide resolution by selective 2'-hydroxyl acylation and primer extension (SHAPE)

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3527727

Identification of common molecular subsequences

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3527727

Chemical and photochemical probing of DNA complexes

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3527727

Fingerprinting noncanonical and tertiary RNA structures by differential SHAPE reactivity.

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3527727

Strong correlation between SHAPE chemistry and the generalized NMR order parameter (S2) in RNA

28 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3527727

Principles for understanding the accuracy of SHAPE-directed RNA structure modeling

28 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3527727

HiTRACE: high-throughput robust analysis for capillary electrophoresis

21 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3527727

21 September 2018

Identifiers

DOI

10.1261/RNA.036327.112

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14 August 2017

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14 August 2017

PubMed publication ID

23188808

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