Capturing reaction paths and intermediates in Cre-loxP recombination using single-molecule fluorescence (Q36485115)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23184986%20AND%20SRC:MED&resulttype=core&format=json

18 February 2020

title

Capturing reaction paths and intermediates in Cre-loxP recombination using single-molecule fluorescence (English)

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18 February 2020

1 reference

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18 February 2020

Achillefs N Kapanidis

object named as

Achillefs N Kapanidis

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23184986%20AND%20SRC:MED&resulttype=core&format=json

18 February 2020

Justin N M Pinkney

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18 February 2020

Pawel Zawadzki

1 reference

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18 February 2020

Jaroslaw Mazuryk

1 reference

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18 February 2020

Lidia K Arciszewska

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18 February 2020

language of work or name

English

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publication date

26 November 2012

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Proceedings of the National Academy of Sciences of the United States of America

18 February 2020

published in

1 reference

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18 February 2020

volume

109

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18 February 2020

issue

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18 February 2020

page(s)

20871-20876

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Measurements of DNA-loop formation via Cre-mediated recombination.

18 February 2020

cites work

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3529024

Real-time single-molecule tethered particle motion experiments reveal the kinetics and mechanisms of Cre-mediated site-specific recombination

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3529024

Single-molecule analysis reveals the molecular bearing mechanism of DNA strand exchange by a serine recombinase

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3529024

Defining the limits of single-molecule FRET resolution in TIRF microscopy

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3529024

Conformational transitions in DNA polymerase I revealed by single-molecule FRET.

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3529024

Synapsis of loxP sites by Cre recombinase

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3529024

Viewing single lambda site-specific recombination events from start to finish

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3529024

Mechanisms of site-specific recombination.

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3529024

Volume-Exclusion Effects in Tethered-Particle Experiments: Bead Size Matters

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3529024

Accurate FRET measurements within single diffusing biomolecules using alternating-laser excitation

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3529024

Fluorescence-aided molecule sorting: analysis of structure and interactions by alternating-laser excitation of single molecules

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3529024

Crystal structure of a wild-type Cre recombinase-loxP synapse reveals a novel spacer conformation suggesting an alternative mechanism for DNA cleavage activation

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3529024

Sequence of the loxP site determines the order of strand exchange by the Cre recombinase

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3529024

The Order of Strand Exchanges in Cre-LoxP Recombination and its Basis Suggested by the Crystal Structure of a Cre-LoxP Holliday Junction Complex

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3529024

A structural view of cre-loxp site-specific recombination

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3529024

Structure of the Holliday junction intermediate in Cre-loxP site-specific recombination.

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3529024

Cell-substrate contacts illuminated by total internal reflection fluorescence

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3529024

Isolation and characterization of intermediates in site-specific recombination

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3529024

Transcription by single molecules of RNA polymerase observed by light microscopy

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3529024

Activation of XerCD-dif recombination by the FtsK DNA translocase

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3529024

Directional resolution of synthetic holliday structures by the Cre recombinase

28 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3529024

Comparative kinetic analysis of FLP and cre recombinases: mathematical models for DNA binding and recombination.

28 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3529024

Tethered particle motion as a diagnostic of DNA tether length

28 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3529024

DNA topology and geometry in Flp and Cre recombination

21 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3529024

Preferential synapsis of loxP sites drives ordered strand exchange in Cre-loxP site-specific recombination.

21 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3529024

Structural dynamics of individual Holliday junctions.

21 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3529024

Site-specific recombination by the bacteriophage P1 lox-Cre system. Cre-mediated synapsis of two lox sites

21 September 2018

1 reference

12 December 2020

Manipulation of transgenes by site-specific recombination: use of Cre recombinase

1 reference

12 December 2020

Identification of Cre residues involved in synapsis, isomerization, and catalysis

1 reference

12 December 2020

Coordinated control of XerC and XerD catalytic activities during Holliday junction resolution

1 reference

12 December 2020

Identifiers

DOI

10.1073/PNAS.1211922109

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23184986%20AND%20SRC:MED&resulttype=core&format=json

18 February 2020

0 references

1 reference

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18 February 2020

PubMed publication ID

23184986

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23184986%20AND%20SRC:MED&resulttype=core&format=json