Measuring the dynamics of E. coli ribosome biogenesis using pulse-labeling and quantitative mass spectrometry (Q36408988)

14 August 2017

Measuring the dynamics of E. coli ribosome biogenesis using pulse-labeling and quantitative mass spectrometry (English)

1 reference

14 August 2017

0 references

Stephen S Chen

1 reference

14 August 2017

Edit Sperling

1 reference

14 August 2017

Josh M Silverman

1 reference

14 August 2017

Joseph H Davis

1 reference

14 August 2017

James R Williamson

1 reference

14 August 2017

1 October 2012

1 reference

14 August 2017

1 reference

14 August 2017

1 reference

14 August 2017

1 reference

14 August 2017

3325-3334

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Mechanism and rates of exchange of L7/L12 between ribosomes and the effects of binding EF-G.

14 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3501348

Bacterial growth laws and their applications

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3501348

Assembly of Bacterial Ribosomes

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3501348

The dynamic state of protein turnover: It's about time

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3501348

Visualizing ribosome biogenesis: parallel assembly pathways for the 30S subunit

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3501348

Dysregulation of ribosome biogenesis and translational capacity is associated with tumor progression of human breast cancer cells.

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3501348

Advances in protein turnover analysis at the global level and biological insights

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3501348

A complex assembly landscape for the 30S ribosomal subunit

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3501348

Inhibition of bacterial ribosome assembly: a suitable drug target?

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3501348

Quantitative ESI-TOF analysis of macromolecular assembly kinetics

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3501348

Concurrent nucleation of 16S folding and induced fit in 30S ribosome assembly

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3501348

Nucleolus, ribosomes, and cancer

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3501348

Ribosome biogenesis and the translation process in Escherichia coli

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3501348

Quantitative mass spectrometry in proteomics: a critical review

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3501348

The weird and wonderful world of bacterial ribosome regulation.

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3501348

Impaired ribosome biogenesis in Diamond-Blackfan anemia

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3501348

Construction of Escherichia coli K-12 in-frame, single-gene knockout mutants: the Keio collection

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3501348

An assembly landscape for the 30S ribosomal subunit

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3501348

The bacterial ribosome as a target for antibiotics

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3501348

Antibiotics targeting ribosomes: resistance, selectivity, synergism and cellular regulation

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3501348

Proteome dynamics in complex organisms: using stable isotopes to monitor individual protein turnover rates.

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3501348

Nitrogen assimilation and global regulation in Escherichia coli.

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3501348

rRNA transcription and growth rate-dependent regulation of ribosome synthesis in Escherichia coli

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3501348

The Escherichia coli ribosomal protein S16 is an endonuclease

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3501348

Cell growth and lambda phage development controlled by the same essential Escherichia coli gene, ftsH/hflB.

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3501348

Evidence that ribosomal protein S10 participates in control of transcription termination

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3501348

Regulation of the synthesis of ribosomes and ribosomal components

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3501348

Assembly mapping of 30 S ribosomal proteins from Escherichia coli. Further studies.

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3501348

Post-translational modification of Escherichia coli ribosomal protein S6

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3501348

Exchange of individual ribosomal proteins between ribosomes as studied by heavy isotope-transfer experiments

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3501348

Exchange of ribosomal proteins among the ribosomes of Escherichia coli

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3501348

Quantitative proteomic analysis of ribosome assembly and turnover in vivo

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3501348

Biogenesis of 50 s particles in exponentially growing Escherichia coli

28 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3501348

Ribosomal protein in E. coli: rate of synthesis and pool size at different growth rates

28 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3501348

Individual ribosomal protein pool size and turnover rate in Escherichia coli

28 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3501348

Incorporation of six additional proteins to complete the assembly map of the 50 S subunit from Escherichia coli ribosomes.

28 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3501348

A new method for stoichiometric analysis of proteins in complex mixture--reevaluation of the stoichiometry of E. coli ribosomal proteins

28 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3501348

Assembly of transcription elongation complexes containing the N protein of phage lambda and the Escherichia coli elongation factors NusA, NusB, NusG, and S10

28 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3501348

The in vivo order of protein addition in the course of Escherichia coli 30 S and 50 S subunit biogenesis

28 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3501348

Intermediates and time kinetics of the in vivo assembly of Escherichia coli ribosomes

28 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3501348

Quantitation of the ribosomal protein autoregulatory network using mass spectrometry

28 June 2018

1 reference

https://api.crossref.org/works/10.1039%2FC2MB25310K

Quantitative analysis of isotope distributions in proteomic mass spectrometry using least-squares Fourier transform convolution

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC2MB25310K

Ribosome reactivation by replacement of damaged proteins.

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC2MB25310K

Interaction of ribosomal proteins, S6, S8, S15 and S18 with the central domain of 16 S ribosomal RNA.

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC2MB25310K

Ribosomal protein S1 is required for translation of most, if not all, natural mRNAs in Escherichia coli in vivo

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC2MB25310K

Pools of Ribosomal Proteins in Escherichia coli. Studies on the Exchange of Proteins between Pools and Ribosomes

21 January 2018

1 reference

12 December 2020

The stoichiometry of the ribosomal proteins of Escherichia coli

1 reference

12 December 2020

Accumulation of free ribosomal proteins S1, L7, and L12 in Escherichia coli

1 reference

12 December 2020

Control of production of ribosomal protein

1 reference

12 December 2020

Stoichiometry of the 30S ribosomal proteins of Escherichia coli

1 reference

12 December 2020

The in vivo order of addition of ribosomal proteins in the course of Escherichia coli 30-S subunit biogenesis

1 reference

12 December 2020

Biogenesis of ribosomes: Free ribosomal protein pools in Escherichia coli

1 reference

12 December 2020

Identifiers

DOI

10.1039/C2MB25310K

1 reference

14 August 2017

1 reference

14 August 2017

PubMed publication ID

23090316

1 reference