Investigating the Relationship between Topology and Evolution in a Dynamic Nematode Odor Genetic Network (Q36302578)

13 August 2017

Investigating the Relationship between Topology and Evolution in a Dynamic Nematode Odor Genetic Network (English)

1 reference

13 August 2017

1 reference

13 August 2017

Damien M O'Halloran

1 reference

13 August 2017

28 September 2012

1 reference

International journal of evolutionary biology

13 August 2017

1 reference

13 August 2017

2012

1 reference

13 August 2017

548081

1 reference

PMC publication ID

3465961

Creative Commons Attribution 3.0 Unported

13 August 2017

start time

28 September 2012

1 reference

April 2022 Public Data File from Crossref

copyrighted

1 reference

April 2022 Public Data File from Crossref

describes a project that uses

Cytoscape

object named as

Cytoscape

2 references

9 June 2022

https://europepmc.org/search?query=(METHODS:'Cytoscape')

based on heuristic

inferred from PubMed Central ID database lookup

CZ Software Mentions: A large dataset of software mentions in the biomedical literature

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The cGMP signaling pathway affects feeding behavior in the necromenic nematode Pristionchus pacificus

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WormBase 2012: more genomes, more data, new website

30 September 2017

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InParanoid 7: new algorithms and tools for eukaryotic orthology analysis

30 September 2017

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DnaSP v5: a software for comprehensive analysis of DNA polymorphism data

30 September 2017

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3465961

The population genetics of dN/dS

30 September 2017

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3465961

High nucleotide divergence in developmental regulatory genes contrasts with the structural elements of olfactory pathways in caenorhabditis

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3465961

The Pristionchus pacificus genome provides a unique perspective on nematode lifestyle and parasitism

30 September 2017

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Natural variation in Pristionchus pacificus insect pheromone attraction involves the protein kinase EGL-4.

30 September 2017

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30 September 2017

Pristionchus pacificus

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Multiple lineage specific expansions within the guanylyl cyclase gene family

30 September 2017

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Goalpha regulates olfactory adaptation by antagonizing Gqalpha-DAG signaling in Caenorhabditis elegans

30 September 2017

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Caenorhabditus elegans arrestin regulates neural G protein signaling and olfactory adaptation and recovery

30 September 2017

1 reference

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Evolution and topology in the yeast protein interaction network

30 September 2017

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MUSCLE: multiple sequence alignment with high accuracy and high throughput

30 September 2017

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3465961

Cytoscape: a software environment for integrated models of biomolecular interaction networks

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3465961

A Simple, Fast, and Accurate Algorithm to Estimate Large Phylogenies by Maximum Likelihood

30 September 2017

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3465961

OrthoMCL: Identification of Ortholog Groups for Eukaryotic Genomes

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3465961

Activity of the Caenorhabditis elegans UNC-86 POU transcription factor modulates olfactory sensitivity

30 September 2017

1 reference

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Evolutionary rate in the protein interaction network

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3465961

Regulation of distinct attractive and aversive mechanisms mediating benzaldehyde chemotaxis in Caenorhabditis elegans

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3465961

egl-4 acts through a transforming growth factor-beta/SMAD pathway in Caenorhabditis elegans to regulate multiple neuronal circuits in response to sensory cues

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3465961

A transmembrane guanylyl cyclase (DAF-11) and Hsp90 (DAF-21) regulate a common set of chemosensory behaviors in caenorhabditis elegans

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3465961

Estimating synonymous and nonsynonymous substitution rates under realistic evolutionary models

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3465961

Goalpha and diacylglycerol kinase negatively regulate the Gqalpha pathway in C. elegans

30 September 2017

1 reference

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PAML: a program package for phylogenetic analysis by maximum likelihood

30 September 2017

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3465961

Gapped BLAST and PSI-BLAST: a new generation of protein database search programs

30 September 2017

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Guanylyl cyclase expression in specific sensory neurons: a new family of chemosensory receptors.

30 September 2017

1 reference

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Odorant-selective genes and neurons mediate olfaction in C. elegans.

30 September 2017

1 reference

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Countercurrent Separation: A New Method for Studying Behavior of Small Aquatic Organisms

30 September 2017

1 reference

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Chemotaxis by the nematode Caenorhabditis elegans: identification of attractants and analysis of the response by use of mutants

30 September 2017

1 reference

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Mutant sensory cilia in the nematode Caenorhabditis elegans

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3465961

Chemosensory neurons with overlapping functions direct chemotaxis to multiple chemicals in C. elegans

30 September 2017

1 reference

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C. elegans G protein regulator RGS-3 controls sensitivity to sensory stimuli

30 September 2017

1 reference

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A network of stimulatory and inhibitory Galpha-subunits regulates olfaction in Caenorhabditis elegans

29 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3465961

Olfaction and odor discrimination are mediated by the C. elegans guanylyl cyclase ODR-1.

29 June 2018

1 reference

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The complete family of genes encoding G proteins of Caenorhabditis elegans

29 June 2018

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EAT-4, a homolog of a mammalian sodium-dependent inorganic phosphate cotransporter, is necessary for glutamatergic neurotransmission in caenorhabditis elegans

29 June 2018

1 reference

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Mutations in a cyclic nucleotide-gated channel lead to abnormal thermosensation and chemosensation in C. elegans

29 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3465961

A putative cyclic nucleotide-gated channel is required for sensory development and function in C. elegans

29 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3465961

The correlation of evolutionary rate with pathway position in plant terpenoid biosynthesis

29 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3465961

Dynamic evolution of the innate immune system in Drosophila

22 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3465961

OMA Browser--exploring orthologous relations across 352 complete genomes

22 September 2018

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3465961

The molecular phylogeny of a nematode-specific clade of heterotrimeric G-protein alpha-subunit genes.

22 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3465961

The cyclic GMP-dependent protein kinase EGL-4 regulates olfactory adaptation in C. elegans.

22 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3465961

Negative regulation and gain control of sensory neurons by the C. elegans calcineurin TAX-6.

22 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3465961

Pleiotropy and the preservation of perfection

22 September 2018

2 references

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3465961

22 September 2018

https://api.crossref.org/works/10.1155%2F2012%2F548081

The G alpha protein ODR-3 mediates olfactory and nociceptive function and controls cilium morphogenesis in C. elegans olfactory neurons.

21 January 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3465961

Reprogramming chemotaxis responses: sensory neurons define olfactory preferences in C. elegans.

22 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3465961

Odorant-specific adaptation pathways generate olfactory plasticity in C. elegans.

22 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3465961

Patterns of evolutionary rate variation among genes of the anthocyanin biosynthetic pathway

22 September 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/23056995

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1155/2012/548081

1 reference

13 August 2017

1 reference

PMC publication ID

3465961

13 August 2017

PubMed publication ID

23056995

1 reference

PMC publication ID

3465961