The exocyclic groups of DNA modulate the affinity and positioning of the histone octamer (Q36203100)

12 August 2017

The exocyclic groups of DNA modulate the affinity and positioning of the histone octamer (English)

1 reference

12 August 2017

M Buttinelli

1 reference

12 August 2017

A Minnock

1 reference

12 August 2017

G Panetta

1 reference

12 August 2017

M Waring

1 reference

12 August 2017

A Travers

1 reference

12 August 2017

language of work or name

English

0 references

publication date

1 July 1998

1 reference

Proceedings of the National Academy of Sciences of the United States of America

12 August 2017

1 reference

12 August 2017

1 reference

12 August 2017

1 reference

12 August 2017

8544-8549

1 reference

Crystal structure of the nucleosome core particle at 2.8 Å resolution

12 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=21112

X-ray and solution studies of DNA oligomers and implications for the structural basis of A-tract-dependent curvature

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=21112

DNA methylation: a molecular lock

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=21112

Nucleosome packaging and nucleosome positioning of genomic DNA

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=21112

PCR-based development of DNA substrates containing modified bases: an efficient system for investigating the role of the exocyclic groups in chemical and structural recognition by minor groove binding drugs and proteins

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=21112

Localized DNA flexibility contributes to target site selection by DNA-bending proteins.

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=21112

Propeller-twisting of base-pairs and the conformational mobility of dinucleotide steps in DNA.

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=21112

DNA sequence-specific reading by echinomycin: role of hydrogen bonding and stacking interactions.

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=21112

Sequence-dependent bending propensity of DNA as revealed by DNase I: parameters for trinucleotides

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=21112

Analysis of local helix bending in crystal structures of DNA oligonucleotides and DNA-protein complexes

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=21112

The influence of exocyclic substituents of purine bases on DNA curvature

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=21112

The bending of DNA in nucleosomes and its wider implications

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=21112

Artificial nucleosome positioning sequences

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=21112

CpG-rich islands and the function of DNA methylation

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=21112

Twin hydroxymethyluracil-A base pair steps define the binding site for the DNA-binding protein TF1.

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=21112

DNA bending and its relation to nucleosome positioning.

2 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=21112

Sequence periodicities in chicken nucleosome core DNA.

2 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=21112

Analysis of local helix geometry in three B-DNA decamers and eight dodecamers

2 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=21112

Using hydroxyl radical to probe DNA structure

2 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=21112

Kinetic analysis of deoxyribonuclease I cleavages in the nucleosome core: Evidence for a DNA superhelix

2 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=21112

Structure of the nucleosome core particle at 7 Å resolution

2 July 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.95.15.8544

System for accurate one-dimensional gel analysis including high-resolution quantitative footprinting.

21 January 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=21112

Sequence-dependent DNA structure. The role of base stacking interactions

22 September 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.95.15.8544

B-DNA twisting correlates with base-pair morphology.

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.95.15.8544

Helix rigidity of DNA: the meroduplex as an experimental paradigm

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.95.15.8544

DNA base-stacking interactions: a comparison of theoretical calculations with oligonucleotide X-ray crystal structures

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.95.15.8544

Effects of DNA sequence and histone-histone interactions on nucleosome placement

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.95.15.8544

Effects of base substitutions on the binding of a DNA-bending protein

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.95.15.8544

Iron(II) EDTA used to measure the helical twist along any DNA molecule

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.95.15.8544

Reconstitution of nucleosome core particles containing glucosylated DNA

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.95.15.8544

Expanded CTG triplet blocks from the myotonic dystrophy gene create the strongest known natural nucleosome positioning elements

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.95.15.8544

Chemical determinants of DNA bending at adenine-thymine tracts

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.95.15.8544

Pyrimidine 5-methyl groups influence the magnitude of DNA curvature

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.95.15.8544

Methylation at CpG sequences does not influence histone H1 binding to a nucleosome including a Xenopus borealis 5 S rRNA gene

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.95.15.8544

CpG methylation remodels chromatin structure in vitro

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.95.15.8544

Identification and characterization of genomic nucleosome-positioning sequences

21 January 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/9671714

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Nucleosome interactions with a human Alu element. Transcriptional repression and effects of template methylation

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/9671714

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1073/PNAS.95.15.8544

1 reference

12 August 2017

0 references

1 reference

12 August 2017

PubMed publication ID

9671714

1 reference