Fine-scale population recombination rates, hotspots, and correlates of recombination in the Medicago truncatula genome. (Q36054073)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22554552%20AND%20SRC:MED&resulttype=core&format=json

31 January 2020

title

Fine-scale population recombination rates, hotspots, and correlates of recombination in the Medicago truncatula genome (English)

1 reference

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31 January 2020

1 reference

1 reference

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31 January 2020

Timothy Paape

1 reference

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31 January 2020

Peng Zhou

1 reference

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31 January 2020

Antoine Branca

1 reference

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31 January 2020

Nevin Young

1 reference

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31 January 2020

Peter Tiffin

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31 January 2020

publication date

3 May 2012

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Genome Biology and Evolution

31 January 2020

published in

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31 January 2020

volume

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31 January 2020

issue

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31 January 2020

page(s)

726-737

1 reference

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Genome-wide patterns of genetic variation in worldwide Arabidopsis thaliana accessions from the RegMap panel

31 January 2020

cites work

1 reference

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The Medicago genome provides insight into the evolution of rhizobial symbioses

2 October 2017

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Whole-genome nucleotide diversity, recombination, and linkage disequilibrium in the model legume Medicago truncatula

2 October 2017

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Reduced efficacy of natural selection on codon usage bias in selfing Arabidopsis and Capsella species.

2 October 2017

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PRDM9 is a major determinant of meiotic recombination hotspots in humans and mice

2 October 2017

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A first-generation haplotype map of maize

2 October 2017

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The B73 Maize Genome: Complexity, Diversity, and Dynamics

2 October 2017

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Mu transposon insertion sites and meiotic recombination events co-localize with epigenetic marks for open chromatin across the maize genome

2 October 2017

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Do genetic recombination and gene density shape the pattern of DNA elimination in rice long terminal repeat retrotransposons?

2 October 2017

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Biased gene conversion and the evolution of mammalian genomic landscapes

2 October 2017

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Partial correlation analysis indicates causal relationships between GC-content, exon density and recombination rate in the human genome

2 October 2017

1 reference

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Fine-scale mapping of recombination rate in Drosophila refines its correlation to diversity and divergence

2 October 2017

1 reference

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The impact of recombination on nucleotide substitutions in the human genome

2 October 2017

1 reference

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Identification and characterization of nucleotide-binding site-leucine-rich repeat genes in the model plant Medicago truncatula

2 October 2017

1 reference

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Recombination and linkage disequilibrium in Arabidopsis thaliana.

2 October 2017

1 reference

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Recombination: an underappreciated factor in the evolution of plant genomes

2 October 2017

1 reference

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Microsatellite diversity and broad scale geographic structure in a model legume: building a set of nested core collection for studying naturally occurring variation in Medicago truncatula.

2 October 2017

1 reference

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Plant NBS-LRR proteins in pathogen sensing and host defense

2 October 2017

1 reference

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The influence of recombination on human genetic diversity

2 October 2017

1 reference

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2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3381680

Meiotic recombination hotspots in plants

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3381680

Estimating the contribution of mutation, recombination and gene conversion in the generation of haplotypic diversity

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3381680

Variation in crossing-over rates across chromosome 4 of Arabidopsis thaliana reveals the presence of meiotic recombination "hot spots".

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3381680

Uneven distribution of expressed sequence tag loci on maize pachytene chromosomes

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3381680

A fine-scale map of recombination rates and hotspots across the human genome

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3381680

The pattern of polymorphism in Arabidopsis thaliana

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3381680

Application of coalescent methods to reveal fine-scale rate variation and recombination hotspots

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3381680

Recombination and base composition: the case of the highly self-fertilizing plant Arabidopsis thaliana

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3381680

Where the crossovers are: recombination distributions in mammals.

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3381680

Integrating genetic linkage maps with pachytene chromosome structure in maize

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3381680

The fine-scale structure of recombination rate variation in the human genome

2 October 2017

1 reference

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Comparative recombination rates in the rat, mouse, and human genomes

2 October 2017

1 reference

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Does recombination shape the distribution and evolution of tandemly arrayed genes (TAGs) in the Arabidopsis thaliana genome?

2 October 2017

1 reference

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Estimating recombination rates from population-genetic data

2 October 2017

1 reference

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Biased gene conversion: implications for genome and sex evolution

2 October 2017

1 reference

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The organization and rate of evolution of wheat genomes are correlated with recombination rates along chromosome arms

2 October 2017

1 reference

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Variation in recombination rate across the genome: evidence and implications

2 October 2017

1 reference

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Integrating genomics, bioinformatics, and classical genetics to study the effects of recombination on genome evolution

2 October 2017

1 reference

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A coalescent-based method for detecting and estimating recombination from gene sequences

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3381680

The extent of linkage disequilibrium in Arabidopsis thaliana

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3381680

GC-content evolution in mammalian genomes: the biased gene conversion hypothesis

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3381680

Intensely punctate meiotic recombination in the class II region of the major histocompatibility complex

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3381680

The highly recombinogenic bz locus lies in an unusually gene-rich region of the maize genome

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3381680

Does recombination improve selection on codon usage? Lessons from nematode and fly complete genomes

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3381680

Global mapping of meiotic recombination hotspots and coldspots in the yeast Saccharomyces cerevisiae

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3381680

Recombination rate estimation in the presence of hotspots

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3381680

Identification of higher-order functional domains in the human ENCODE regions

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3381680

A comparison of three estimators of the population-scaled recombination rate: accuracy and robustness

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3381680

Computational identification and characterization of novel genes from legumes

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3381680

Plant disease resistance genes encode members of an ancient and diverse protein family within the nucleotide-binding superfamily

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3381680

Levels of naturally occurring DNA polymorphism correlate with recombination rates in D. melanogaster

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3381680

Natural selection in gene-dense regions shapes the genomic pattern of polymorphism in wild and domesticated rice.

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3381680

GC-biased gene conversion and selection affect GC content in the Oryza genus (rice).

23 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3381680

Variation in crossover rates across a 3-Mb contig of bread wheat (Triticum aestivum) reveals the presence of a meiotic recombination hotspot

23 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3381680

High-resolution mapping of crossovers reveals extensive variation in fine-scale recombination patterns among humans.

23 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3381680

SequenceLDhot: detecting recombination hotspots

23 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3381680

Proceedings of the SMBE Tri-National Young Investigators' Workshop 2005. Accurate inference and estimation in population genomics

23 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3381680

Genome organization of more than 300 defensin-like genes in Arabidopsis

23 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3381680

Comparison of fine-scale recombination rates in humans and chimpanzees.

23 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3381680

Recombination drives the evolution of GC-content in the human genome.

23 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3381680

Genome-wide analysis of NBS-LRR-encoding genes in Arabidopsis.

23 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3381680

Recombination occurs uniformly within the bronze gene, a meiotic recombination hotspot in the maize genome.

23 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3381680

An Arabidopsis haplotype map takes root

23 September 2018

1 reference

Crossref

https://api.crossref.org/works/10.1093%2FGBE%2FEVS046

Physical maps and recombination frequency of six rice chromosomes

21 January 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/22554552

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Physical distribution of recombination in B-genome chromosomes of tetraploid wheat

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/22554552

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1093/GBE/EVS046

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22554552%20AND%20SRC:MED&resulttype=core&format=json

31 January 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22554552%20AND%20SRC:MED&resulttype=core&format=json

31 January 2020

PubMed publication ID

22554552

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22554552%20AND%20SRC:MED&resulttype=core&format=json