Gene order and chromosome dynamics coordinate spatiotemporal gene expression during the bacterial growth cycle (Q35673712)

9 August 2017

title

Gene order and chromosome dynamics coordinate spatiotemporal gene expression during the bacterial growth cycle (English)

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9 August 2017

Patrick Sobetzko

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9 August 2017

Andrew Travers

series ordinal

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9 August 2017

Georgi Muskhelishvili

series ordinal

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9 August 2017

language of work or name

English

0 references

publication date

19 December 2011

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Proceedings of the National Academy of Sciences of the United States of America

9 August 2017

published in

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9 August 2017

volume

109

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9 August 2017

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9 August 2017

page(s)

E42-50

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Analog regulation of metabolic demand

9 August 2017

cites work

1 reference

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27 July 2018

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27 July 2018

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27 July 2018

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27 July 2018

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27 July 2018

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Nucleoid remodeling by an altered HU protein: reorganization of the transcription program

27 July 2018

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DNA looping-mediated repression by histone-like protein H-NS: specific requirement of Esigma70 as a cofactor for looping

27 July 2018

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A genetic selection for supercoiling mutants of Escherichia coli reveals proteins implicated in chromosome structure

27 July 2018

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27 July 2018

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27 July 2018

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27 July 2018

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27 July 2018

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Macrodomain organization of the Escherichia coli chromosome.

27 July 2018

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H-NS: a universal regulator for a dynamic genome

27 July 2018

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27 July 2018

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27 July 2018

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Requirement of ArcA for redox regulation in Escherichia coli under microaerobic but not anaerobic or aerobic conditions

27 July 2018

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27 July 2018

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Promoter protection by a transcription factor acting as a local topological homeostat

27 July 2018

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sigma factor selectivity of Escherichia coli RNA polymerase: role for CRP, IHF and lrp transcription factors

27 July 2018

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Growth phase-dependent variation in protein composition of the Escherichia coli nucleoid

27 July 2018

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A stationary phase protein in Escherichia coli with binding activity to the major sigma subunit of RNA polymerase

27 July 2018

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Regulation of HU alpha and HU beta by CRP and FIS in Escherichia coli.

27 July 2018

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rRNA operon multiplicity in Escherichia coli and the physiological implications of rrn inactivation

27 July 2018

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Purified dnaA protein in initiation of replication at the Escherichia coli chromosomal origin of replication

27 July 2018

1 reference

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Changes in the linking number of supercoiled DNA accompany growth transitions in Escherichia coli

27 July 2018

1 reference

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Dramatic changes in Fis levels upon nutrient upshift in Escherichia coli

27 July 2018

1 reference

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Lethal overproduction of the Escherichia coli nucleoid protein H-NS: ultramicroscopic and molecular autopsy

27 July 2018

1 reference

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Structural Coupling between RNA Polymerase Composition and DNA Supercoiling in Coordinating Transcription: a Global Role for the Omega Subunit?

27 July 2018

1 reference

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Gene clusters reflecting macrodomain structure respond to nucleoid perturbations.

25 September 2018

1 reference

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DnaA-ATP acts as a molecular switch to control levels of ribonucleotide reductase expression in Escherichia coli.

25 September 2018

1 reference

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General organisational principles of the transcriptional regulation system: a tree or a circle?

25 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3258614

Strong intranucleoid interactions organize the Escherichia coli chromosome into a nucleoid filament.

25 September 2018

1 reference

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A systematic in vitro study of nucleoprotein complexes formed by bacterial nucleoid-associated proteins revealing novel types of DNA organization

25 September 2018

1 reference

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Control of RpoS in global gene expression of Escherichia coli in minimal media.

25 September 2018

1 reference

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Selective repression by Fis and H-NS at the Escherichia coli dps promoter.

25 September 2018

1 reference

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Dynamic events of sister chromosomes in the cell cycle of Escherichia coli.

25 September 2018

1 reference

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Analysis of promoter targets for Escherichia coli transcription elongation factor GreA in vivo and in vitro

25 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3258614

DoriC: a database of oriC regions in bacterial genomes

25 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3258614

Antagonistic regulation of Escherichia coli ribosomal RNA rrnB P1 promoter activity by GreA and DksA.

25 September 2018

1 reference

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A two-component phosphotransfer network involving ArcB, ArcA, and RssB coordinates synthesis and proteolysis of sigmaS (RpoS) in E. coli

25 September 2018

1 reference

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Effect of oxygen on the Escherichia coli ArcA and FNR regulation systems and metabolic responses

25 September 2018

1 reference

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Spatial patterns of transcriptional activity in the chromosome of Escherichia coli

25 September 2018

1 reference

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The distribution of RNA polymerase in Escherichia coli is dynamic and sensitive to environmental cues

25 September 2018

1 reference

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Spatial and temporal organization of replicating Escherichia coli chromosomes.

25 September 2018

1 reference

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Functional modulation of Escherichia coli RNA polymerase

25 September 2018

1 reference

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Effects of the Escherichia coli DNA-binding protein H-NS on rRNA synthesis in vivo

25 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3258614

The rpoB mutants destabilizing initiation complexes at stringently controlled promoters behave like “stringent” RNA polymerases in Escherichia coli

25 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3258614

Topoisomerase IV, not gyrase, decatenates products of site-specific recombination inEscherichia coli

25 September 2018

1 reference

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Antagonistic involvement of FIS and H-NS proteins in the transcriptional control of hns expression.

25 September 2018

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DNA supercoiling depends on the phosphorylation potential in Escherichia coli.

25 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3258614

Co-variation of tRNA abundance and codon usage in Escherichia coli at different growth rates.

25 September 2018

1 reference

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Parallel Genetic and Phenotypic Evolution of DNA Superhelicity in Experimental Populations of Escherichia coli

25 September 2018

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Crossref

https://api.crossref.org/works/10.1073%2FPNAS.1108229109

Expression of variant nuclear Arabidopsis tRNA(Ser) genes and pre-tRNA maturation differ in HeLa, yeast and wheat germ extracts

21 January 2018

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Crossref

https://api.crossref.org/works/10.1073%2FPNAS.1108229109

A DNA architectural protein couples cellular physiology and DNA topology in Escherichia coli

21 January 2018

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12 December 2020

Roles of topoisomerases in maintaining steady-state DNA supercoiling in Escherichia coli

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12 December 2020

DNA supercoiling contributes to disconnect sigmaS accumulation from sigmaS-dependent transcription in Escherichia coli

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12 December 2020

Nucleoid restructuring in stationary-state bacteria

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12 December 2020

DksA: a critical component of the transcription initiation machinery that potentiates the regulation of rRNA promoters by ppGpp and the initiating NTP

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12 December 2020

Bacterial DNA supercoiling and [ATP]/[ADP]. Changes associated with a transition to anaerobic growth

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12 December 2020

Variation in HU composition during growth of Escherichia coli: the heterodimer is required for long term survival

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12 December 2020

Identifiers

DOI

10.1073/PNAS.1108229109

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9 August 2017

0 references

1 reference

9 August 2017

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