Core requirements of the adenine riboswitch aptamer for ligand binding (Q35641235)

9 August 2017

title

Core requirements of the adenine riboswitch aptamer for ligand binding (English)

1 reference

9 August 2017

1 reference

Jean-François Lemay

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9 August 2017

Daniel A Lafontaine

series ordinal

1 reference

9 August 2017

language of work or name

English

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publication date

2 January 2007

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9 August 2017

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9 August 2017

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9 August 2017

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9 August 2017

page(s)

339-350

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Structural basis of glmS ribozyme activation by glucosamine-6-phosphate

9 August 2017

cites work

1 reference

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Crystal structures of the thi-box riboswitch bound to thiamine pyrophosphate analogs reveal adaptive RNA-small molecule recognition

12 July 2018

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Folding of the adenine riboswitch

12 July 2018

1 reference

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Structure of the S-adenosylmethionine riboswitch regulatory mRNA element

12 July 2018

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Structural basis for gene regulation by a thiamine pyrophosphate-sensing riboswitch

12 July 2018

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Structure of the eukaryotic thiamine pyrophosphate riboswitch with its regulatory ligand

12 July 2018

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Thermodynamic and kinetic characterization of ligand binding to the purine riboswitch aptamer domain

12 July 2018

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Riboswitches and the role of noncoding RNAs in bacterial metabolic control

12 July 2018

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12 July 2018

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12 July 2018

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Riboswitch structures: purine ligands replace tertiary contacts

12 July 2018

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The purine efflux pump PbuE in Bacillus subtilis modulates expression of the PurR and G-box (XptR) regulons by adjusting the purine base pool size

12 July 2018

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Structural basis for discriminative regulation of gene expression by adenine- and guanine-sensing mRNAs

12 July 2018

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Natural and engineered nucleic acids as tools to explore biology

12 July 2018

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Structure of a natural guanine-responsive riboswitch complexed with the metabolite hypoxanthine

12 July 2018

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A glycine-dependent riboswitch that uses cooperative binding to control gene expression

12 July 2018

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Riboswitch finder--a tool for identification of riboswitch RNAs

12 July 2018

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Riboswitches exert genetic control through metabolite-induced conformational change

12 July 2018

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Gene regulation by riboswitches

12 July 2018

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Control of gene expression by a natural metabolite-responsive ribozyme

12 July 2018

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The riboswitch control of bacterial metabolism

12 July 2018

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Adenine riboswitches and gene activation by disruption of a transcription terminator

12 July 2018

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Coenzyme B12 riboswitches are widespread genetic control elements in prokaryotes

12 July 2018

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Thiamine-regulated gene expression of Aspergillus oryzae thiA requires splicing of the intron containing a riboswitch-like domain in the 5'-UTR

12 July 2018

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An mRNA structure in bacteria that controls gene expression by binding lysine

12 July 2018

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12 July 2018

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12 July 2018

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Definition of a second Bacillus subtilis pur regulon comprising the pur and xpt-pbuX operons plus pbuG, nupG (yxjA), and pbuE (ydhL).

12 July 2018

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An mRNA structure that controls gene expression by binding S-adenosylmethionine

12 July 2018

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Riboswitches control fundamental biochemical pathways in Bacillus subtilis and other bacteria

12 July 2018

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Metabolite-binding RNA domains are present in the genes of eukaryotes

12 July 2018

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12 July 2018

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Transcription termination control of the S box system: direct measurement of S-adenosylmethionine by the leader RNA.

12 July 2018

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12 July 2018

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12 July 2018

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Thiamine derivatives bind messenger RNAs directly to regulate bacterial gene expression

12 July 2018

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Genetic control by a metabolite binding mRNA

12 July 2018

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Association of an RNA kissing complex analyzed using 2-aminopurine fluorescence

12 July 2018

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Quantifying the energetic interplay of RNA tertiary and secondary structure interactions

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1800517

Relationship between internucleotide linkage geometry and the stability of RNA.

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1800517

Energetics and cooperativity of tertiary hydrogen bonds in RNA structure

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1800517

T7 RNA polymerase produces 5' end heterogeneity during in vitro transcription from certain templates

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1800517

Oligoribonucleotide synthesis using T7 RNA polymerase and synthetic DNA templates

12 July 2018

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1800517

Basic local alignment search tool

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1800517

An RNA sensor for intracellular Mg(2+).

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1800517

Thiamine pyrophosphate riboswitches are targets for the antimicrobial compound pyrithiamine

25 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1800517

The kinetics of ligand binding by an adenine-sensing riboswitch

25 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1800517

Roles of Mg2+ in TPP-dependent riboswitch

25 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1800517

Imidazole rescue of a cytosine mutation in a self-cleaving ribozyme

25 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1800517

Folding of branched RNA species

25 September 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/17200422

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Sensing small molecules by nascent RNA: a mechanism to control transcription in bacteria

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/17200422

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1261/RNA.142007

1 reference

9 August 2017

1 reference

9 August 2017

1 reference