Bioinformatic identification of novel elements potentially involved in messenger RNA fate control during spermatogenesis (Q35618387)

9 August 2017

title

Bioinformatic identification of novel elements potentially involved in messenger RNA fate control during spermatogenesis (English)

1 reference

9 August 2017

1 reference

Grant W Hennig

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9 August 2017

0 references

R Keegan Idler

1 reference

9 August 2017

language of work or name

English

1 reference

inferred from

Biology of Reproduction

publication date

1 June 2012

1 reference

9 August 2017

published in

Biology of Reproduction

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9 August 2017

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9 August 2017

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9 August 2017

page(s)

138

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The RNA binding protein SAM68 transiently localizes in the chromatoid body of male germ cells and influences expression of select microRNAs

9 August 2017

cites work

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Functional interplay between RNA-binding protein HuR and microRNAs

27 July 2018

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The RNase III enzyme DROSHA is essential for microRNA production and spermatogenesis

27 July 2018

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Divergence of Pumilio/fem-3 mRNA binding factor (PUF) protein specificity through variations in an RNA-binding pocket

27 July 2018

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miR-503 represses CUG-binding protein 1 translation by recruiting CUGBP1 mRNA to processing bodies

27 July 2018

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Competitive regulation of nucleolin expression by HuR and miR-494

27 July 2018

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MicroRNA regulation by RNA-binding proteins and its implications for cancer

27 July 2018

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Male germ cells express abundant endogenous siRNAs

27 July 2018

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Control of messenger RNA fate by RNA-binding proteins: an emphasis on mammalian spermatogenesis

27 July 2018

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The RNA-binding protein ELAVL1/HuR is essential for mouse spermatogenesis, acting both at meiotic and postmeiotic stages

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4435427

DAZAP1, an RNA-binding protein required for development and spermatogenesis, can regulate mRNA translation.

27 July 2018

1 reference

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Cytoplasmic mRNP granules at a glance

27 July 2018

1 reference

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miRBase: integrating microRNA annotation and deep-sequencing data

27 July 2018

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4435427

The poly(A)-binding protein partner Paip2a controls translation during late spermiogenesis in mice

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4435427

UTRdb and UTRsite (RELEASE 2010): a collection of sequences and regulatory motifs of the untranslated regions of eukaryotic mRNAs

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4435427

MIWI-independent small RNAs (MSY-RNAs) bind to the RNA-binding protein, MSY2, in male germ cells

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4435427

Co-occupancy of two Pumilio molecules on a single hunchback NRE.

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4435427

Temporally regulated traffic of HuR and its associated ARE-containing mRNAs from the chromatoid body to polysomes during mouse spermatogenesis

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4435427

DAZAP1 interacts via its RNA-recognition motifs with the C-termini of other RNA-binding proteins

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4435427

Role of RNA-binding proteins in mammalian spermatogenesis

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4435427

Small but influential: the role of microRNAs on gene regulatory network and 3'UTR evolution

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4435427

Identification of a signature motif in target mRNAs of RNA-binding protein AUF1

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4435427

Distinct role of long 3' UTR BDNF mRNA in spine morphology and synaptic plasticity in hippocampal neurons

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4435427

Signalling pathways regulating nucleo-cytoplasmic shuttling of the mRNA-binding protein HuR.

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4435427

Conserved regulation of MAP kinase expression by PUF RNA-binding proteins

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4435427

Elucidation of a C-rich signature motif in target mRNAs of RNA-binding protein TIAR.

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4435427

Mice deficient for RNA-binding protein brunol1 show reduction of spermatogenesis but are fertile

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4435427

Phosphorylation of HuR by Chk2 regulates SIRT1 expression

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4435427

Inactivation of CUG-BP1/CELF1 causes growth, viability, and spermatogenesis defects in mice

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4435427

A novel nucleocytoplasmic shuttling sequence of DAZAP1, a testis-abundant RNA-binding protein

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4435427

Cytoplasmic mRNA polyadenylation and translation assays

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4435427

Expression profiling reveals meiotic male germ cell mRNAs that are translationally up- and down-regulated

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4435427

AU-rich elements and associated factors: are there unifying principles?

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4435427

Identification and functional outcome of mRNAs associated with RNA-binding protein TIA-1.

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4435427

STAR proteins quaking-6 and GLD-1 regulate translation of the homologues GLI1 and tra-1 through a conserved RNA 3'UTR-based mechanism

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4435427

HuR stabilizes vacuolar H+-translocating ATPase mRNA during cellular energy depletion

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4435427

Interaction of the conserved meiotic regulators, BOULE (BOL) and PUMILIO-2 (PUM2).

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4435427

RNA-binding proteins in early development

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4435427

Effect of 3'UTR length on the translational regulation of 5'-terminal oligopyrimidine mRNAs.

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4435427

The RNA ligands for mouse proline-rich RNA-binding protein (mouse Prrp) contain two consensus sequences in separate loop structure

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4435427

Proteomic characterization of messenger ribonucleoprotein complexes bound to nontranslated or translated poly(A) mRNAs in the rat cerebral cortex.

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4435427

mRNA openers and closers: modulating AU-rich element-controlled mRNA stability by a molecular switch in mRNA secondary structure.

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4435427

Identification of a target RNA motif for RNA-binding protein HuR.

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4435427

Production of fertile offspring from genetically infertile male mice

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4435427

Cytoplasmic polyadenylation element (CPE)- and CPE-binding protein (CPEB)-independent mechanisms regulate early class maternal mRNA translational activation in Xenopus oocytes

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4435427

Integrating computationally assembled mouse transcript sequences with the Mouse Genome Informatics (MGI) database

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4435427

An analysis of the sequence requirements of EDEN-BP for specific RNA binding

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4435427

Germ cell differentiation and synaptonemal complex formation are disrupted in CPEB knockout mice

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4435427

MSY2 and MSY4 bind a conserved sequence in the 3' untranslated region of protamine 1 mRNA in vitro and in vivo

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4435427

The RNA-binding specificity of the mouse Dazl protein

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4435427

The roles of RNA-binding proteins in spermatogenesis and male infertility.

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4435427

Cytoplasmic polyadenylation in development and beyond

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4435427

A conserved RNA-binding protein that regulates sexual fates in the C. elegans hermaphrodite germ line

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4435427

Specificity and determinants of Sam68 RNA binding. Implications for the biological function of K homology domains

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4435427

Premature translation of protamine 1 mRNA causes precocious nuclear condensation and arrests spermatid differentiation in mice

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4435427

Disruption in the AU motif of the mouse TNF-alpha 3' UTR correlates with reduced TNF production by macrophages in vitro

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4435427

Storage of messenger RNA in eukaryotes: envelopment with protein, translational barrier at 5' side, or conformational masking by 3' side?

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4435427

Translational regulation of oskar mRNA by bruno, an ovarian RNA-binding protein, is essential

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4435427

Poly(A) addition during maturation of frog oocytes: distinct nuclear and cytoplasmic activities and regulation by the sequence UUUUUAU.

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4435427

Poly(A) elongation during Xenopus oocyte maturation is required for translational recruitment and is mediated by a short sequence element

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4435427

Prosomes, subcomplexes of untranslated mRNP.

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4435427

Structural and transcriptional features of the mouse spermatid genome

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4435427

Mos 3' UTR regulatory differences underlie species-specific temporal patterns of Mos mRNA cytoplasmic polyadenylation and translational recruitment during oocyte maturation

27 July 2018

1 reference

https://api.crossref.org/works/10.1095%2FBIOLREPROD.112.102434

Ultrastructural characterization of spermatogenesis and its evolutionary conservation in the germline: germinal granules in mammals

21 January 2018

1 reference

https://api.crossref.org/works/10.1095%2FBIOLREPROD.112.102434

Conservation of the C.elegans tra-2 3'UTR translational control

21 January 2018

1 reference

https://api.crossref.org/works/10.1095%2FBIOLREPROD.112.102434

Overexpression of the CstF-64 and CPSF-160 polyadenylation protein messenger RNAs in mouse male germ cells

21 January 2018

1 reference

https://api.crossref.org/works/10.1095%2FBIOLREPROD.112.102434

A sequence-specific RNA binding complex expressed in murine germ cells contains MSY2 and MSY4

21 January 2018

1 reference

https://api.crossref.org/works/10.1095%2FBIOLREPROD.112.102434

Tissue distribution of AU-rich mRNA-binding proteins involved in regulation of mRNA decay

21 January 2018

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https://api.crossref.org/works/10.1095%2FBIOLREPROD.112.102434

Multiple significance tests: the Bonferroni method

21 January 2018

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The biology of infertility: research advances and clinical challenges

21 January 2018

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A Pumilio-induced RNA structure switch in p27-3' UTR controls miR-221 and miR-222 accessibility

21 January 2018

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Identifying translationally regulated genes during stem cell differentiation

21 January 2018

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12 December 2020

A guide through present computational approaches for the identification of mammalian microRNA targets

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12 December 2020

DNA packaging in mouse spermatids. Synthesis of protamine variants and four transition proteins

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12 December 2020

Translational regulation and deadenylation of a protamine mRNA during spermiogenesis in the mouse

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12 December 2020

Molecular mechanisms of male germ cell differentiation

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12 December 2020

10.1095/BIOLREPROD.112.102434

Identifiers

DOI

1 reference

9 August 2017

1 reference

9 August 2017

1 reference