A homing endonuclease and the 50-nt ribosomal bypass sequence of phage T4 constitute a mobile DNA cassette (Q35239764)

7 August 2017

title

A homing endonuclease and the 50-nt ribosomal bypass sequence of phage T4 constitute a mobile DNA cassette (English)

1 reference

7 August 2017

Qinglu Zeng

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?resulttype=core&format=json&query=SRC%3AMED%20AND%20EXT_ID%3A21930924

12 December 2024

Richard P. Bonocora

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?resulttype=core&format=json&query=SRC%3AMED%20AND%20EXT_ID%3A21930924

12 December 2024

Ethan V. Abel

series ordinal

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?resulttype=core&format=json&query=SRC%3AMED%20AND%20EXT_ID%3A21930924

12 December 2024

David A. Shub

series ordinal

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?resulttype=core&format=json&query=SRC%3AMED%20AND%20EXT_ID%3A21930924

12 December 2024

language of work or name

English

0 references

publication date

19 September 2011

1 reference

full work available at URL

7 August 2017

https://www.pnas.org/content/pnas/108/39/16351.full.pdf

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?resulttype=core&format=json&query=SRC%3AMED%20AND%20EXT_ID%3A21930924

https://europepmc.org/articles/PMC3182709

12 December 2024

file format

HyperText Markup Language

online access status

open access

content deliverer

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?resulttype=core&format=json&query=SRC%3AMED%20AND%20EXT_ID%3A21930924

https://europepmc.org/articles/PMC3182709?pdf=render

12 December 2024

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?resulttype=core&format=json&query=SRC%3AMED%20AND%20EXT_ID%3A21930924

https://doi.org/10.1073/pnas.1107633108

12 December 2024

online access status

open access

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?resulttype=core&format=json&query=SRC%3AMED%20AND%20EXT_ID%3A21930924

https://pnas.org/doi/pdf/10.1073/pnas.1107633108

12 December 2024

1 reference

DOI

10.1073/PNAS.1107633108

https://api.crossref.org/works/10.1073/PNAS.1107633108

Proceedings of the National Academy of Sciences of the United States of America

12 December 2024

published in

1 reference

7 August 2017

volume

108

1 reference

7 August 2017

1 reference

7 August 2017

page(s)

16351-16356

1 reference

Genomes of the T4-related bacteriophages as windows on microbial genome evolution

7 August 2017

cites work

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3182709

Mobile DNA elements in T4 and related phages.

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3182709

Conservation of intron and intein insertion sites: implications for life histories of parasitic genetic elements

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3182709

Group I introns and inteins: disparate origins but convergent parasitic strategies

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3182709

Fractured genes: a novel genomic arrangement involving new split inteins and a new homing endonuclease family

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3182709

A likely pathway for formation of mobile group I introns

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3182709

CDD: specific functional annotation with the Conserved Domain Database

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3182709

Translational bypassing without peptidyl-tRNA anticodon scanning of coding gap mRNA

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3182709

Insertion of a homing endonuclease creates a genes-in-pieces ribonucleotide reductase that retains function

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3182709

Plasticity of the gene functions for DNA replication in the T4-like phages

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3182709

Recoding in bacteriophages and bacterial IS elements.

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3182709

Group I intron homing in Bacillus phages SPO1 and SP82: a gene conversion event initiated by a nicking homing endonuclease

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3182709

Two self-splicing group I introns in the ribonucleotide reductase large subunit gene of Staphylococcus aureus phage Twort

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3182709

Intronless homing: site-specific endonuclease SegF of bacteriophage T4 mediates localized marker exclusion analogous to homing endonucleases of group I introns

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3182709

Ribonucleotide reductase genes of Bacillus prophages: a refuge to introns and intein coding sequences

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3182709

Efficiency of T4 gene 60 translational bypassing.

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3182709

Genomic polymorphism in the T-even bacteriophages.

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3182709

CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3182709

Structural conservation among three homologous introns of bacteriophage T4 and the group I introns of eukaryotes

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3182709

A persistent untranslated sequence within bacteriophage T4 DNA topoisomerase gene 60.

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3182709

Intron mobility in the T-even phages: high frequency inheritance of group I introns promoted by intron open reading frames.

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3182709

Gene splicing by overlap extension: tailor-made genes using the polymerase chain reaction

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3182709

Modelling of the three-dimensional architecture of group I catalytic introns based on comparative sequence analysis

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3182709

A nascent peptide is required for ribosomal bypass of the coding gap in bacteriophage T4 gene 60.

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3182709

Analysis of the roles of tRNA structure, ribosomal protein L9, and the bacteriophage T4 gene 60 bypassing signals during ribosome slippage on mRNA.

12 July 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1107633108

A free-standing homing endonuclease targets an intron insertion site in the psbA gene of cyanophages.

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1107633108

Physiological Studies of Conditional Lethal Mutants of Bacteriophage T4D

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1107633108

Genetic insertions and diversification of the PolB-type DNA polymerase (gp43) of T4-related phages

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1107633108

Assembly of a fragmented ribonucleotide reductase by protein interaction domains derived from a mobile genetic element

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1107633108

A novel group I intron-encoded endonuclease specific for the anticodon region of tRNA(fMet) genes

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1107633108

Characterization of a new class of deletions of the D region of the bacteriophage T4 genome

21 January 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/21930924

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identification of bacteriophage T4 gene 60 product and a role for this protein in DNA topoisomerase

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/21930924

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Relationship between bacteriophage T4 and T6 DNA topoisomerases. T6 39-protein subunit is equivalent to the combined T4 39- and 60-protein subunits

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/21930924

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1073/PNAS.1107633108

1 reference

7 August 2017

0 references

1 reference

7 August 2017

1 reference