The origins, evolution, and functional potential of alternative splicing in vertebrates (Q35223510)

7 August 2017

title

The origins, evolution, and functional potential of alternative splicing in vertebrates (English)

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alternative mRNA splicing, via spliceosome

7 August 2017

main subject

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7 August 2017

Jennifer Harrow

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Roderic Guigó i Serra

series ordinal

object named as

Roderic Guigó

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Cédric Howald

series ordinal

object named as

Cédric Howald

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Jonathan M Mudge

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Tyler Alioto

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Thomas Derrien

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Alexandre Reymond

1 reference

7 August 2017

Adam Frankish

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7 August 2017

Julio Fernandez Banet

series ordinal

object named as

Julio Fernandez-Banet

1 reference

7 August 2017

publication date

6 May 2011

1 reference

Molecular Biology and Evolution

7 August 2017

published in

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7 August 2017

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7 August 2017

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7 August 2017

page(s)

2949-2959

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Noisy splicing drives mRNA isoform diversity in human cells.

7 August 2017

cites work

1 reference

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The adaptive significance of unproductive alternative splicing in primates.

27 July 2018

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Characteristics of transposable element exonization within human and mouse

27 July 2018

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Five-vertebrate ChIP-seq reveals the evolutionary dynamics of transcription factor binding

27 July 2018

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Expansion of the eukaryotic proteome by alternative splicing

27 July 2018

1 reference

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Detection of nonneutral substitution rates on mammalian phylogenies

27 July 2018

1 reference

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Mechanisms of alternative splicing regulation: insights from molecular and genomics approaches

27 July 2018

1 reference

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Genome-wide identification of alternative splice forms down-regulated by nonsense-mediated mRNA decay in Drosophila

27 July 2018

1 reference

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Alu exonization events reveal features required for precise recognition of exons by the splicing machinery

27 July 2018

1 reference

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Ultrafast and memory-efficient alignment of short DNA sequences to the human genome

27 July 2018

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27 July 2018

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RNA-Seq: a revolutionary tool for transcriptomics

27 July 2018

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CAPERalpha is a novel Rel-TAD-interacting factor that inhibits lymphocyte transformation by the potent Rel/NF-kappaB oncoprotein v-Rel

27 July 2018

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Profiling the HeLa S3 transcriptome using randomly primed cDNA and massively parallel short-read sequencing

27 July 2018

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Mapping and quantifying mammalian transcriptomes by RNA-Seq

27 July 2018

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Multifactorial interplay controls the splicing profile of Alu-derived exons

27 July 2018

1 reference

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Cross-kingdom patterns of alternative splicing and splice recognition

27 July 2018

1 reference

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Alternative splicing of Alu exons--two arms are better than one

27 July 2018

1 reference

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Alternative splicing: current perspectives

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3176834

Biased exonization of transposed elements in duplicated genes: A lesson from the TIF-IA gene

27 July 2018

1 reference

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27 July 2018

1 reference

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Clustal W and Clustal X version 2.0

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3176834

Comparative analysis of transposed element insertion within human and mouse genomes reveals Alu's unique role in shaping the human transcriptome.

27 July 2018

1 reference

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Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project

27 July 2018

1 reference

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The emergence of alternative 3' and 5' splice site exons from constitutive exons

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3176834

Control of alternative RNA splicing and gene expression by eukaryotic riboswitches

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3176834

The implications of alternative splicing in the ENCODE protein complement

27 July 2018

1 reference

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Different levels of alternative splicing among eukaryotes

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3176834

GENCODE: producing a reference annotation for ENCODE

27 July 2018

1 reference

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EGASP: the human ENCODE Genome Annotation Assessment Project

27 July 2018

1 reference

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Quantitative microarray profiling provides evidence against widespread coupling of alternative splicing with nonsense-mediated mRNA decay to control gene expression

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3176834

The Zebrafish Information Network: the zebrafish model organism database

27 July 2018

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Evolutionarily conserved elements in vertebrate, insect, worm, and yeast genomes

27 July 2018

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27 July 2018

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Automated generation of heuristics for biological sequence comparison

27 July 2018

1 reference

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Nonsense surveillance regulates expression of diverse classes of mammalian transcripts and mutes genomic noise

27 July 2018

1 reference

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How prevalent is functional alternative splicing in the human genome?

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3176834

Intronic sequences flanking alternatively spliced exons are conserved between human and mouse

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3176834

Alu-containing exons are alternatively spliced

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3176834

SC35 autoregulates its expression by promoting splicing events that destabilize its mRNAs

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3176834

Alternative splicing: increasing diversity in the proteomic world

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3176834

Isolation and characterization of cortactin isoforms and a novel cortactin-binding protein, CBP90

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3176834

dbEST--database for "expressed sequence tags"

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3176834

Basic local alignment search tool

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3176834

Genome-wide analysis of alternative splicing in Caenorhabditis elegans

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3176834

Regulation of plant gene expression by alternative splicing

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3176834

Alternative isoform regulation in human tissue transcriptomes

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3176834

Unproductive splicing of SR genes associated with highly conserved and ultraconserved DNA elements

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3176834

Repbase Update, a database of eukaryotic repetitive elements

26 September 2018

1 reference

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A gene expression map for the euchromatic genome of Drosophila melanogaster.

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3176834

Alternative splicing in the human, mouse and rat genomes is associated with an increased frequency of exon creation and/or loss

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3176834

Evidence for the widespread coupling of alternative splicing and nonsense-mediated mRNA decay in humans

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3176834

Selecting for functional alternative splices in ESTs

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3176834

Alternative splicing in teleost fish genomes: same-species and cross-species analysis and comparisons

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3176834

The zebrafish genome project: sequence analysis and annotation

15 November 2018

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3176834

Estimating rates of alternative splicing in mammals and invertebrates

15 November 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/21551269

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

1 reference

https://pubmed.ncbi.nlm.nih.gov/21551269

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1093/MOLBEV/MSR127

1 reference

7 August 2017

1 reference

7 August 2017

1 reference