RNA structure comparison, motif search and discovery using a reduced representation of RNA conformational space (Q35222902)

7 August 2017

title

RNA structure comparison, motif search and discovery using a reduced representation of RNA conformational space (English)

1 reference

7 August 2017

Carlos M Duarte

1 reference

7 August 2017

Leven M Wadley

series ordinal

1 reference

7 August 2017

Anna Marie Pyle

series ordinal

1 reference

7 August 2017

language of work or name

English

0 references

publication date

1 August 2003

1 reference

7 August 2017

published in

Nucleic Acids Research

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7 August 2017

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7 August 2017

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7 August 2017

page(s)

4755-4761

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Stereochemistry of polypeptide chain configurations

7 August 2017

cites work

1 reference

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13 July 2018

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13 July 2018

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13 July 2018

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Structural insights into group II intron catalysis and branch-site selection

13 July 2018

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A pre-translocational intermediate in protein synthesis observed in crystals of enzymatically active 50S subunits

13 July 2018

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Structural basis for the interaction of antibiotics with the peptidyl transferase centre in eubacteria

13 July 2018

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The influence of different structure representations on the clustering of an RNA nucleotides data set.

13 July 2018

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A standard reference frame for the description of nucleic acid base-pair geometry.

13 July 2018

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The kink-turn: a new RNA secondary structure motif

13 July 2018

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Geometric nomenclature and classification of RNA base pairs

13 July 2018

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Recognition of cognate transfer RNA by the 30S ribosomal subunit

13 July 2018

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RNA tertiary interactions in the large ribosomal subunit: the A-minor motif

13 July 2018

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The structural basis for the action of the antibiotics tetracycline, pactamycin, and hygromycin B on the 30S ribosomal subunit

13 July 2018

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TectoRNA: modular assembly units for the construction of RNA nano-objects

13 July 2018

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The crystal structure of UUCG tetraloop

13 July 2018

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Structure of the 30S ribosomal subunit

13 July 2018

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The structural basis of ribosome activity in peptide bond synthesis

13 July 2018

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The complete atomic structure of the large ribosomal subunit at 2.4 A resolution

13 July 2018

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13 July 2018

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MANIP: an interactive tool for modelling RNA.

13 July 2018

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The two faces of the Escherichia coli 23 S rRNA sarcin/ricin domain: the structure at 1.11 A resolution

13 July 2018

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Direct crosslinking of the antitumor antibiotic sparsomycin, and its derivatives, to A2602 in the peptidyl transferase center of 23S-like rRNA within ribosome-tRNA complexes.

13 July 2018

1 reference

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Reconstitution of functional 50S ribosomes from in vitro transcripts of Bacillus stearothermophilus 23S rRNA.

13 July 2018

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Stepping through an RNA structure: A novel approach to conformational analysis

13 July 2018

1 reference

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A common motif organizes the structure of multi-helix loops in 16 S and 23 S ribosomal RNAs

13 July 2018

1 reference

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The 5S rRNA loop E: chemical probing and phylogenetic data versus crystal structure

13 July 2018

1 reference

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SS3D-P2: a three-dimensional substructure search program for protein motifs based on secondary structure elements

13 July 2018

1 reference

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PROMOTIF--a program to identify and analyze structural motifs in proteins

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=169959

Automatic classification and analysis of alpha alpha-turn motifs in proteins

13 July 2018

1 reference

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Secondary and tertiary structural foldings in tRNA. A diagonal plot analysis using the blocked nucleotide scheme

13 July 2018

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Stereochemical criteria for polypeptides and proteins. V. Conformation of a system of three linked peptide units

13 July 2018

1 reference

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Intermediate states in the movement of transfer RNA in the ribosome

13 July 2018

1 reference

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13 July 2018

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Peptidyl transferase antibiotics perturb the relative positioning of the 3'-terminal adenosine of P/P'-site-bound tRNA and 23S rRNA in the ribosome

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=169959

An automated classification of the structure of protein loops.

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=169959

Interaction of tRNA with 23S rRNA in the ribosomal A, P, and E sites

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=169959

A complete conformational map for RNA

26 September 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/12907716

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

The spatial configuration of ordered polynucleotide chains. I. Helix formation and base stacking

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/12907716

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1093/NAR/GKG682

1 reference

7 August 2017

1 reference

7 August 2017

1 reference