The eukaryotic ancestor had a complex ubiquitin signaling system of archaeal origin (Q35081193)

6 August 2017

title

The eukaryotic ancestor had a complex ubiquitin signaling system of archaeal origin (English)

1 reference

6 August 2017

Xavier Grau-Bové

0 references

Iñaki Ruiz-Trillo

0 references

Arnau Sebé-Pedrós

1 reference

6 August 2017

publication date

17 December 2014

1 reference

Molecular Biology and Evolution

6 August 2017

published in

1 reference

6 August 2017

1 reference

6 August 2017

1 reference

6 August 2017

page(s)

726-739

1 reference

describes a project that uses

6 August 2017

Cytoscape

object named as

Cytoscape

2 references

9 June 2022

https://europepmc.org/search?query=(METHODS:'Cytoscape')

based on heuristic

inferred from PubMed Central ID database lookup

CZ Software Mentions: A large dataset of software mentions in the biomedical literature

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8 July 2018

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8 July 2018

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8 July 2018

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8 July 2018

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8 July 2018

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8 July 2018

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8 July 2018

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8 July 2018

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8 July 2018

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8 July 2018

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8 July 2018

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8 July 2018

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8 July 2018

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8 July 2018

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8 July 2018

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8 July 2018

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8 July 2018

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8 July 2018

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8 July 2018

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8 July 2018

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8 July 2018

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8 July 2018

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8 July 2018

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8 July 2018

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Evolution of protein domain promiscuity in eukaryotes

8 July 2018

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The evolutionary origin of hedgehog proteins

8 July 2018

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Modification in reverse: the SUMO proteases

8 July 2018

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8 July 2018

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8 July 2018

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8 July 2018

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DDB1 functions as a linker to recruit receptor WD40 proteins to CUL4-ROC1 ubiquitin ligases

8 July 2018

1 reference

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8 July 2018

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8 July 2018

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The prokaryotic antecedents of the ubiquitin-signaling system and the early evolution of ubiquitin-like beta-grasp domains

8 July 2018

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8 July 2018

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Modification of proteins by ubiquitin and ubiquitin-like proteins

8 July 2018

1 reference

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Comparative genomics and structural biology of the molecular innovations of eukaryotes

8 July 2018

1 reference

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An unusual choanoflagellate protein released by Hedgehog autocatalytic processing

8 July 2018

1 reference

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Insights into E3 ligase activity revealed by a SUMO-RanGAP1-Ubc9-Nup358 complex

8 July 2018

1 reference

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Function and regulation of cullin-RING ubiquitin ligases

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4327156

Complex spliceosomal organization ancestral to extant eukaryotes

8 July 2018

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Comparative genomics, evolution and origins of the nuclear envelope and nuclear pore complex

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4327156

Mechanism and function of deubiquitinating enzymes

8 July 2018

1 reference

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A hitchhiker's guide to the cullin ubiquitin ligases: SCF and its kin

8 July 2018

1 reference

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The ubiquitin 26S proteasome proteolytic pathway

8 July 2018

1 reference

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The SCF ubiquitin ligase: insights into a molecular machine

8 July 2018

1 reference

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Protein modification by SUMO

8 July 2018

1 reference

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A novel protein-conjugating system for Ufm1, a ubiquitin-fold modifier

8 July 2018

1 reference

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Conformational flexibility underlies ubiquitin ligation mediated by the WWP1 HECT domain E3 ligase

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4327156

The F-box subunit of the SCF E3 complex is encoded by a diverse superfamily of genes in Arabidopsis

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4327156

Horizontal gene transfer in prokaryotes: quantification and classification

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4327156

Evolution and function of ubiquitin-like protein-conjugation systems

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4327156

Functional heterogeneity of small ubiquitin-related protein modifiers SUMO-1 versus SUMO-2/3

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4327156

Structure of an E6AP-UbcH7 complex: insights into ubiquitination by the E2-E3 enzyme cascade

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4327156

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8 July 2018

1 reference

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Structure determination of the small ubiquitin-related modifier SUMO-1

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4327156

The MAPK signaling cascade

8 July 2018

1 reference

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Towards a natural system of organisms: proposal for the domains Archaea, Bacteria, and Eucarya

8 July 2018

1 reference

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Archamoebae: the ancestral eukaryotes?

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4327156

Matched-pairs tests of homogeneity with applications to homologous nucleotide sequences

8 July 2018

1 reference

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Computing topological parameters of biological networks

21 January 2018

1 reference

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Eukaryotes with no mitochondria

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSU334

Evolution of a signalling system that incorporates both redundancy and diversity: Arabidopsis SUMOylation

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSU334

SUMO-conjugating and SUMO-deconjugating enzymes from Arabidopsis

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSU334

An alternative root for the eukaryote tree of life

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSU334

RBR ubiquitin ligases: Diversification and streamlining in animal lineages

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSU334

Functional analysis of the RING-type ubiquitin ligase family of Arabidopsis.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSU334

Genomic survey of premetazoans shows deep conservation of cytoplasmic tyrosine kinases and multiple radiations of receptor tyrosine kinases.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSU334

A congruent phylogenomic signal places eukaryotes within the Archaea.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSU334

Modules, multidomain proteins and organismic complexity

21 January 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/25525215

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1093/MOLBEV/MSU334

1 reference

6 August 2017

1 reference

6 August 2017

1 reference