Statistical bioinformatic methods in microbial genome analysis (Q35069715)

6 August 2017

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title

Statistical bioinformatic methods in microbial genome analysis (English)

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6 August 2017

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Pietro Liò

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6 August 2017

language of work or name

English

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publication date

1 March 2003

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6 August 2017

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6 August 2017

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6 August 2017

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6 August 2017

page(s)

266-273

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Bioinformatics tools for whole genomes

6 August 2017

cites work

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https://api.crossref.org/works/10.1002%2FBIES.10231

A probabilistic method for identifying start codons in bacterial genomes.

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Prediction of transcription terminators in bacterial genomes.

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Improved microbial gene identification with GLIMMER

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GeneMarkS: a self-training method for prediction of gene starts in microbial genomes. Implications for finding sequence motifs in regulatory regions

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Computational identification of noncoding RNAs in E. coli by comparative genomics

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The COG database: new developments in phylogenetic classification of proteins from complete genomes

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Prediction of operons in microbial genomes

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A simulation study of the reliability of recombination detection methods.

21 January 2018

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Maximum-likelihood approach for gene family evolution under functional divergence.

21 January 2018

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Assessment of compositional heterogeneity within and between eukaryotic genomes

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Finding pathogenicity islands and gene transfer events in genome data

21 January 2018

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Stochastic models for heterogeneous DNA sequences

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Mining Bacillus subtilis chromosome heterogeneities using hidden Markov models

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Dinucleotide relative abundance extremes: a genomic signature

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Comparative DNA analysis across diverse genomes.

21 January 2018

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Detecting anomalous gene clusters and pathogenicity islands in diverse bacterial genomes

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CRITICA: coding region identification tool invoking comparative analysis

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Probabilistic and statistical properties of words: an overview

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Estimating the Entropy of DNA Sequences

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Asymmetric substitution patterns in the two DNA strands of bacteria

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Base composition skews, replication orientation, and gene orientation in 12 prokaryote genomes

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Analyzing genomes with cumulative skew diagrams

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Strand compositional asymmetry in bacterial and large viral genomes

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Skewed oligomers and origins of replication.

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Evidence for symmetric chromosomal inversions around the replication origin in bacteria

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Evolution of biological information

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DNA binding sites: representation and discovery

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Identifying DNA and protein patterns with statistically significant alignments of multiple sequences

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Building a dictionary for genomes: identification of presumptive regulatory sites by statistical analysis

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Regulatory element detection using correlation with expression.

21 January 2018

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A DNA structural atlas for Escherichia coli

21 January 2018

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Ecologic genomics of DNA: upstream bending in prokaryotic promoters

21 January 2018

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Ordering genes in a flagella pathway by analysis of expression kinetics from living bacteria

21 January 2018

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Bacterial chemotaxis and the question of gain

21 January 2018

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Genetic "code": representations and dynamical models of genetic components and networks

21 January 2018

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Network motifs in the transcriptional regulation network of Escherichia coli

21 January 2018

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Molecular phylogenetics: state-of-the-art methods for looking into the past

21 January 2018

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Bayesian statistics in genetics: a guide for the uninitiated

21 January 2018

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Genome shuffling of Lactobacillus for improved acid tolerance

21 January 2018

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Bioinformatics needs to adopt statistical thinking

21 January 2018

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Species independence of mutual information in coding and noncoding DNA

21 January 2018

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Accuracy and power of the likelihood ratio test in detecting adaptive molecular evolution

21 January 2018

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21 January 2018

Identifiers

DOI

10.1002/BIES.10231

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6 August 2017

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