Metagenomic species profiling using universal phylogenetic marker genes (Q35021237)

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English	Metagenomic species profiling using universal phylogenetic marker genes	scientific article

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scholarly article

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Europe PubMed Central

PubMed publication ID

24141494

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5 August 2017

title

Metagenomic species profiling using universal phylogenetic marker genes (English)

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Europe PubMed Central

PubMed publication ID

24141494

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5 August 2017

main subject

phylogenetics

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inferred from title

metagenomics

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author

Manimozhiyan Arumugam

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8

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PubMed publication ID

24141494

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5 August 2017

Peer Bork

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21

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PubMed publication ID

24141494

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5 August 2017

Søren Brunak

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12

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Søren Brunak

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Shinichi Sunagawa

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1

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Shinichi Sunagawa

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Joël Doré

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18

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Joël Doré

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PubMed publication ID

24141494

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5 August 2017

Daniel R Mende

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Daniel R Mende

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2

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Luis Pedro Coelho

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Luis Pedro Coelho

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7

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Julien Tap

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Julien Tap

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9

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Georg Zeller

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Georg Zeller

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3

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Francisco Guarner

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Francisco Guarner

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14

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Oluf Borbye Pedersen

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Oluf Pedersen

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13

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Simon Rasmussen

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Simon Rasmussen

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11

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Jun Wang

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16

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PubMed publication ID

24141494

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5 August 2017

Willem de Vos

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15

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Willem M de Vos

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Europe PubMed Central

PubMed publication ID

24141494

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5 August 2017

Henrik Bjørn Nielsen

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10

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Henrik Bjørn Nielsen

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Europe PubMed Central

PubMed publication ID

24141494

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5 August 2017

Jens Roat Kultima

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6

object named as

Jens Roat Kultima

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24141494

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5 August 2017

author name string

Fernando Izquierdo-Carrasco

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4

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Europe PubMed Central

PubMed publication ID

24141494

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5 August 2017

Simon A Berger

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5

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Europe PubMed Central

PubMed publication ID

24141494

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5 August 2017

Junhua Li

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17

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PubMed publication ID

24141494

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5 August 2017

S Dusko Ehrlich

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19

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PubMed publication ID

24141494

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5 August 2017

Alexandros Stamatakis

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20

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PubMed publication ID

24141494

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5 August 2017

publication date

20 October 2013

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PubMed publication ID

24141494

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5 August 2017

published in

Nature Methods

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PubMed publication ID

24141494

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5 August 2017

volume

10

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Europe PubMed Central

PubMed publication ID

24141494

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5 August 2017

issue

12

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Europe PubMed Central

PubMed publication ID

24141494

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5 August 2017

page(s)

1196-1199

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24141494

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5 August 2017

cites work

RAxML-VI-HPC: maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models

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PubMed

reference URL

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12 December 2020

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Highlighting new phylogenetic specificities of Crohn's disease microbiota.

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Quantitative Phylogenetic Assessment of Microbial Communities in Diverse Environments

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Comparison of two next-generation sequencing technologies for resolving highly complex microbiota composition using tandem variable 16S rRNA gene regions

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A catalog of reference genomes from the human microbiome

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The gut microbiota in IBD.

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12 December 2020

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AQUA: automated quality improvement for multiple sequence alignments

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12 December 2020

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Country-specific antibiotic use practices impact the human gut resistome

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Experimental factors affecting PCR-based estimates of microbial species richness and evenness.

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Opinion: Re-evaluating prokaryotic species

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A human gut microbial gene catalogue established by metagenomic sequencing

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Accelerated Profile HMM Searches

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Accurate and universal delineation of prokaryotic species

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PubMed

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12 December 2020

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Search and clustering orders of magnitude faster than BLAST

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PubMed

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Genomic variation landscape of the human gut microbiome

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Genome-wide experimental determination of barriers to horizontal gene transfer.

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Accurate and fast estimation of taxonomic profiles from metagenomic shotgun sequences

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Interactive Tree Of Life (iTOL): an online tool for phylogenetic tree display and annotation

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A core gut microbiome in obese and lean twins

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A framework for human microbiome research

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Identifiers

DOI

10.1038/NMETH.2693

1 reference

stated in

Europe PubMed Central

PubMed publication ID

24141494

retrieved

5 August 2017

PubMed publication ID

24141494

1 reference

stated in

Europe PubMed Central

PubMed publication ID

24141494

retrieved

5 August 2017

ResearchGate publication ID

258060819

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