RNA loop-loop interactions as dynamic functional motifs. (Q35012331)

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15 December 2019

review article

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title

RNA loop-loop interactions as dynamic functional motifs (English)

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15 December 2019

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15 December 2019

Christine Brunel

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15 December 2019

Pascale Romby

series ordinal

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15 December 2019

Chantal Ehresmann

series ordinal

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15 December 2019

publication date

1 September 2002

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15 December 2019

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15 December 2019

volume

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15 December 2019

issue

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15 December 2019

page(s)

925-944

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Hierarchy and dynamics of RNA folding

15 December 2019

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Dimerization of HIV-1Lai RNA at low ionic strength. An autocomplementary sequence in the 5' leader region is evidenced by an antisense oligonucleotide

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A 19-nucleotide sequence upstream of the 5' major splice donor is part of the dimerization domain of human immunodeficiency virus 1 genomic RNA.

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Evidence that a kissing loop structure facilitates genomic RNA dimerisation in HIV-1.

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Functional analysis of the core human immunodeficiency virus type 1 packaging signal in a permissive cell line

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Position dependence of functional hairpins important for human immunodeficiency virus type 1 RNA encapsidation in vivo

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Impact of human immunodeficiency virus type 1 RNA dimerization on viral infectivity and of stem-loop B on RNA dimerization and reverse transcription and dissociation of dimerization from packaging

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A loop-loop "kissing" complex is the essential part of the dimer linkage of genomic HIV-1 RNA

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Non-canonical interactions in a kissing loop complex: the dimerization initiation site of HIV-1 genomic RNA.

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Variant effects of non-native kissing-loop hairpin palindromes on HIV replication and HIV RNA dimerization: role of stem-loop B in HIV replication and HIV RNA dimerization

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Structure and dimerization of HIV-1 kissing loop aptamers

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1 reference

https://api.crossref.org/works/10.1016%2FS0300-9084%2802%2901401-3

7 January 2021

Identification of thein VitroHIV-2/SIV RNA Dimerization Site Reveals Striking Differences with HIV-1

1 reference

https://api.crossref.org/works/10.1016%2FS0300-9084%2802%2901401-3

7 January 2021

Sequences involved in the dimerisation of human T cell leukaemia virus type-1 RNA.

1 reference

https://api.crossref.org/works/10.1016%2FS0300-9084%2802%2901401-3

7 January 2021

Oligonucleotide mapping of the core genomic RNA dimer linkage in human T-cell leukaemia virus type-1.

1 reference

https://api.crossref.org/works/10.1016%2FS0300-9084%2802%2901401-3

7 January 2021

Palindromic sequence plays a critical role in human foamy virus dimerization

1 reference

https://api.crossref.org/works/10.1016%2FS0300-9084%2802%2901401-3

7 January 2021

Identification of sites that act together to direct dimerization of human foamy virus RNA in vitro.

1 reference

https://api.crossref.org/works/10.1016%2FS0300-9084%2802%2901401-3

7 January 2021

Characterization of loose and tight dimer forms of avian leukosis virus RNA.

1 reference

https://api.crossref.org/works/10.1016%2FS0300-9084%2802%2901401-3

7 January 2021

In vivo selection of Rous sarcoma virus mutants with randomized sequences in the packaging signal

1 reference

https://api.crossref.org/works/10.1016%2FS0300-9084%2802%2901401-3

7 January 2021

A short autocomplementary sequence plays an essential role in avian sarcoma-leukosis virus RNA dimerization.

1 reference

https://api.crossref.org/works/10.1016%2FS0300-9084%2802%2901401-3

7 January 2021

Bipartite signal for genomic RNA dimerization in Moloney murine leukemia virus

1 reference

https://api.crossref.org/works/10.1016%2FS0300-9084%2802%2901401-3

7 January 2021

Dimerization of MoMuLV genomic RNA: redefinition of the role of the palindromic stem-loop H1 (278-303) and new roles for stem-loops H2 (310-352) and H3 (355-374)

1 reference

https://api.crossref.org/works/10.1016%2FS0300-9084%2802%2901401-3

7 January 2021

A model of PSI dimerization: destabilization of the C278-G303 stem-loop by the nucleocapsid protein (NCp10) of MoMuLV.

1 reference

https://api.crossref.org/works/10.1016%2FS0300-9084%2802%2901401-3

7 January 2021

A short autocomplementary sequence in the 5' leader region is responsible for dimerization of MoMuLV genomic RNA.

1 reference

https://api.crossref.org/works/10.1016%2FS0300-9084%2802%2901401-3

7 January 2021

Spontaneous dimerization of retroviral MoMuLV RNA

1 reference

https://api.crossref.org/works/10.1016%2FS0300-9084%2802%2901401-3

7 January 2021

Effect of dimerization on the conformation of the encapsidation Psi domain of Moloney murine leukemia virus RNA.

1 reference

https://api.crossref.org/works/10.1016%2FS0300-9084%2802%2901401-3

7 January 2021

A retroviral RNA kissing complex containing only two G⋅C base pairs

1 reference

https://api.crossref.org/works/10.1016%2FS0300-9084%2802%2901401-3

7 January 2021

Dimerization of HIV-1 genomic RNA of subtypes A and B: RNA loop structure and magnesium binding

1 reference

https://api.crossref.org/works/10.1016%2FS0300-9084%2802%2901401-3

7 January 2021

Is a closing "GA pair" a rule for stable loop-loop RNA complexes?

1 reference

https://api.crossref.org/works/10.1016%2FS0300-9084%2802%2901401-3

7 January 2021

Dimer initiation sequence of HIV-1Lai genomic RNA: NMR solution structure of the extended duplex

1 reference

https://api.crossref.org/works/10.1016%2FS0300-9084%2802%2901401-3

7 January 2021

Structure of the dimer initiation complex of HIV-1 genomic RNA

1 reference

https://api.crossref.org/works/10.1016%2FS0300-9084%2802%2901401-3

7 January 2021

NMR structure of the mature dimer initiation complex of HIV-1 genomic RNA.

1 reference

https://api.crossref.org/works/10.1016%2FS0300-9084%2802%2901401-3

7 January 2021

The crystal structure of the dimerization initiation site of genomic HIV-1 RNA reveals an extended duplex with two adenine bulges

1 reference

https://api.crossref.org/works/10.1016%2FS0300-9084%2802%2901401-3

7 January 2021

The HIV-1(Lai) RNA dimerization. Thermodynamic parameters associated with the transition from the kissing complex to the extended dimer.

1 reference

https://api.crossref.org/works/10.1016%2FS0300-9084%2802%2901401-3

7 January 2021

Structural requirement for the two-step dimerization of human immunodeficiency virus type 1 genome

1 reference

https://api.crossref.org/works/10.1016%2FS0300-9084%2802%2901401-3

7 January 2021

NCp7 activates HIV-1Lai RNA dimerization by converting a transient loop-loop complex into a stable dimer

1 reference

https://api.crossref.org/works/10.1016%2FS0300-9084%2802%2901401-3

7 January 2021

A kissing complex together with a stable dimer is involved in the HIV-1Lai RNA dimerization process in vitro

1 reference

https://api.crossref.org/works/10.1016%2FS0300-9084%2802%2901401-3

7 January 2021

HIV-1 nucleocapsid protein induces "maturation" of dimeric retroviral RNA in vitro

1 reference

https://api.crossref.org/works/10.1016%2FS0300-9084%2802%2901401-3

7 January 2021

Dimerization of human immunodeficiency virus type 1 RNA involves sequences located upstream of the splice donor site.

1 reference

https://api.crossref.org/works/10.1016%2FS0300-9084%2802%2901401-3

7 January 2021

HIV-1 Genome Dimerization: Kissing-Loop Hairpin Dictates Whether Nucleotides Downstream of the 5‘ Splice Junction Contribute to Loose and Tight Dimerization of Human Immunodeficiency Virus RNA

1 reference

https://api.crossref.org/works/10.1016%2FS0300-9084%2802%2901401-3

7 January 2021

Functional sites in the 5' region of human immunodeficiency virus type 1 RNA form defined structural domains

1 reference

https://api.crossref.org/works/10.1016%2FS0300-9084%2802%2901401-3

7 January 2021

Role of the gag polyprotein precursor in packaging and maturation of Rous sarcoma virus genomic RNA

1 reference

https://api.crossref.org/works/10.1016%2FS0300-9084%2802%2901401-3

7 January 2021

Maturation of dimeric viral RNA of Moloney murine leukemia virus.

1 reference

https://api.crossref.org/works/10.1016%2FS0300-9084%2802%2901401-3

7 January 2021

The genomic RNA in Ty1 virus-like particles is dimeric

1 reference

https://api.crossref.org/works/10.1016%2FS0300-9084%2802%2901401-3

7 January 2021

The human immunodeficiency virus type 1 Gag polyprotein has nucleic acid chaperone activity: possible role in dimerization of genomic RNA and placement of tRNA on the primer binding site

1 reference

https://api.crossref.org/works/10.1016%2FS0300-9084%2802%2901401-3

7 January 2021

Maintenance of the Gag/Gag-Pol ratio is important for human immunodeficiency virus type 1 RNA dimerization and viral infectivity

1 reference

https://api.crossref.org/works/10.1016%2FS0300-9084%2802%2901401-3

7 January 2021

cis-acting sequences responsible for anterior localization of bicoid mRNA in Drosophila embryos

1 reference

https://api.crossref.org/works/10.1016%2FS0300-9084%2802%2901401-3

7 January 2021

Staufen protein associates with the 3'UTR of bicoid mRNA to form particles that move in a microtubule-dependent manner

1 reference

https://api.crossref.org/works/10.1016%2FS0300-9084%2802%2901401-3

7 January 2021

TectoRNA: modular assembly units for the construction of RNA nano-objects

1 reference

https://api.crossref.org/works/10.1016%2FS0300-9084%2802%2901401-3

7 January 2021

Solution studies of the dimerization initiation site of HIV-1 genomic RNA.

1 reference

https://api.crossref.org/works/10.1016%2FS0300-9084%2802%2901401-3

7 January 2021

RNA localization in development

1 reference

https://api.crossref.org/works/10.1016%2FS0300-9084%2802%2901401-3

7 January 2021

Neuronal RNA granules: a link between RNA localization and stimulation-dependent translation

1 reference

https://api.crossref.org/works/10.1016%2FS0300-9084%2802%2901401-3

7 January 2021

Structure of viral connectors and their function in bacteriophage assembly and DNA packaging

1 reference

https://api.crossref.org/works/10.1016%2FS0300-9084%2802%2901401-3

7 January 2021

Phi29 family of phages

1 reference

https://api.crossref.org/works/10.1016%2FS0300-9084%2802%2901401-3

7 January 2021

Initiation events in in-vitro packaging of bacteriophage phi 29 DNA-gp3

1 reference

https://api.crossref.org/works/10.1016%2FS0300-9084%2802%2901401-3

7 January 2021

Prohead and DNA-gp3-dependent ATPase activity of the DNA packaging protein gp16 of bacteriophage phi 29

1 reference

https://api.crossref.org/works/10.1016%2FS0300-9084%2802%2901401-3

7 January 2021

Characterization of the small RNA of the bacteriophage phi 29 DNA packaging machine

1 reference

https://api.crossref.org/works/10.1016%2FS0300-9084%2802%2901401-3

7 January 2021

A small viral RNA is required for in vitro packaging of bacteriophage phi 29 DNA

1 reference

https://api.crossref.org/works/10.1016%2FS0300-9084%2802%2901401-3

7 January 2021

Sequential action of six virus-encoded DNA-packaging RNAs during phage phi29 genomic DNA translocation.

1 reference

https://api.crossref.org/works/10.1016%2FS0300-9084%2802%2901401-3

7 January 2021

Detailed architecture of a DNA translocating machine: the high-resolution structure of the bacteriophage phi29 connector particle

1 reference

https://api.crossref.org/works/10.1016%2FS0300-9084%2802%2901401-3

7 January 2021

Structure of the bacteriophage phi29 DNA packaging motor

1 reference

https://api.crossref.org/works/10.1016%2FS0300-9084%2802%2901401-3

7 January 2021

Mapping the inter-RNA interaction of bacterial virus phi29 packaging RNA by site-specific photoaffinity cross-linking

1 reference

https://api.crossref.org/works/10.1016%2FS0300-9084%2802%2901401-3

7 January 2021

Inhibition of ColE1 RNA primer formation by a plasmid-specified small RNA

1 reference

https://api.crossref.org/works/10.1016%2FS0300-9084%2802%2901401-3

7 January 2021

10.1016/S0300-9084(02)01401-3

Identifiers

DOI

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:12458085%20AND%20SRC:MED&resulttype=core&format=json

15 December 2019

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:12458085%20AND%20SRC:MED&resulttype=core&format=json