Connectedness of PPI network neighborhoods identifies regulatory hub proteins. (Q34771449)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21367871%20AND%20SRC:MED&resulttype=core&format=json

24 January 2020

title

Connectedness of PPI network neighborhoods identifies regulatory hub proteins (English)

1 reference

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24 January 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21367871%20AND%20SRC:MED&resulttype=core&format=json

24 January 2020

Andrew D Fox

1 reference

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24 January 2020

Benjamin J Hescott

series ordinal

1 reference

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24 January 2020

Anselm C Blumer

series ordinal

1 reference

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24 January 2020

language of work or name

English

0 references

publication date

2 March 2011

1 reference

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24 January 2020

1 reference

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24 January 2020

volume

1 reference

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24 January 2020

issue

1 reference

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24 January 2020

page(s)

1135-1142

1 reference

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Elevated PIN1 expression by C/EBPalpha-p30 blocks C/EBPalpha-induced granulocytic differentiation through c-Jun in AML

24 January 2020

cites work

1 reference

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Getting started in gene expression microarray analysis

7 July 2018

1 reference

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Protein-protein interaction networks: how can a hub protein bind so many different partners?

7 July 2018

1 reference

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A novel functional variant (-842G>C) in the PIN1 promoter contributes to decreased risk of squamous cell carcinoma of the head and neck by diminishing the promoter activity

7 July 2018

1 reference

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High throughput interaction data reveals degree conservation of hub proteins.

7 July 2018

1 reference

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Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources

7 July 2018

1 reference

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A genomewide functional network for the laboratory mouse

7 July 2018

1 reference

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High-quality binary protein interaction map of the yeast interactome network

7 July 2018

1 reference

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Conservation and topology of protein interaction networks under duplication-divergence evolution

7 July 2018

1 reference

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Mature ribosomes are selectively degraded upon starvation by an autophagy pathway requiring the Ubp3p/Bre5p ubiquitin protease

7 July 2018

1 reference

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RbAp48 regulates cytoskeletal organization and morphology by increasing K-Ras activity and signaling through mitogen-activated protein kinase

7 July 2018

1 reference

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Assessing significance of connectivity and conservation in protein interaction networks

7 July 2018

1 reference

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Unequal evolutionary conservation of human protein interactions in interologous networks

7 July 2018

1 reference

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The importance of bottlenecks in protein networks: correlation with gene essentiality and expression dynamics

7 July 2018

1 reference

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RbAp48 is a target of nuclear factor-kappaB activity in thyroid cancer

7 July 2018

1 reference

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Discovering biological guilds through topological abstraction

7 July 2018

1 reference

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Reconstructing dynamic regulatory maps

7 July 2018

1 reference

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Relating three-dimensional structures to protein networks provides evolutionary insights

7 July 2018

1 reference

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How complete are current yeast and human protein-interaction networks?

7 July 2018

1 reference

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A multivariate approach for integrating genome-wide expression data and biological knowledge

7 July 2018

1 reference

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7 July 2018

1 reference

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Loss of the homotypic fusion and vacuole protein sorting or golgi-associated retrograde protein vesicle tethering complexes results in gentamicin sensitivity in the yeast Saccharomyces cerevisiae

7 July 2018

1 reference

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BioGRID: a general repository for interaction datasets

7 July 2018

1 reference

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Gene set enrichment analysis: a knowledge-based approach for interpreting genome-wide expression profiles

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3072558

Towards a proteome-scale map of the human protein–protein interaction network

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3072558

Discovering statistically significant pathways in expression profiling studies

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3072558

Conserved patterns of protein interaction in multiple species

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3072558

A crucial role of MafA as a novel therapeutic target for diabetes

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3072558

Significance analysis of functional categories in gene expression studies: a structured permutation approach

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3072558

A first-draft human protein-interaction map

7 July 2018

1 reference

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Evolution and topology in the yeast protein interaction network

7 July 2018

1 reference

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Evidence for dynamically organized modularity in the yeast protein-protein interaction network

7 July 2018

1 reference

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Annotation transfer between genomes: protein-protein interologs and protein-DNA regulogs

7 July 2018

1 reference

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Revealing modularity and organization in the yeast molecular network by integrated analysis of highly heterogeneous genomewide data

7 July 2018

1 reference

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Differentially expressed Maf family transcription factors, c-Maf and MafA, activate glucagon and insulin gene expression in pancreatic islet alpha- and beta-cells

7 July 2018

1 reference

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A map of the interactome network of the metazoan C. elegans

7 July 2018

1 reference

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A global test for groups of genes: testing association with a clinical outcome

7 July 2018

1 reference

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IntAct: an open source molecular interaction database

7 July 2018

1 reference

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A protein interaction map of Drosophila melanogaster

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3072558

Identifying biological themes within lists of genes with EASE

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3072558

The metastasis-associated proteins 1 and 2 form distinct protein complexes with histone deacetylase activity

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3072558

Members of the large Maf transcription family regulate insulin gene transcription in islet beta cells

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3072558

PGC-1alpha-responsive genes involved in oxidative phosphorylation are coordinately downregulated in human diabetes

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3072558

DAVID: Database for Annotation, Visualization, and Integrated Discovery

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3072558

Histone deacetylase in carcinogenesis and its inhibitors as anti-cancer agents

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3072558

Classification of scale-free networks

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3072558

Community structure in social and biological networks

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3072558

Identification of beta-cell-specific insulin gene transcription factor RIPE3b1 as mammalian MafA.

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3072558

MINT: a Molecular INTeraction database

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3072558

MLL translocations specify a distinct gene expression profile that distinguishes a unique leukemia

7 July 2018

1 reference

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Lethality and centrality in protein networks

7 July 2018

1 reference

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A comprehensive analysis of protein-protein interactions in Saccharomyces cerevisiae

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3072558

Toward a protein-protein interaction map of the budding yeast: A comprehensive system to examine two-hybrid interactions in all possible combinations between the yeast proteins

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3072558

Functional characterization of the S. cerevisiae genome by gene deletion and parallel analysis

7 July 2018

1 reference

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Collective dynamics of 'small-world' networks

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3072558

Isolation and partial characterization of mutants of Saccharomyces cerevisiae altered in sensitivities to lethal effects of bleomycins

7 July 2018

1 reference

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The role of disorder in interaction networks: a structural analysis

7 July 2018

1 reference

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PIN1, the cell cycle and cancer.

26 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3072558

Estimating and improving protein interaction error rates.

26 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3072558

Histone deacetylases in acute myeloid leukaemia show a distinctive pattern of expression that changes selectively in response to deacetylase inhibitors.

26 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3072558

Testing differential gene expression in functional groups. Goeman's global test versus an ANCOVA approach.

26 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3072558

Changes in apoptosis-related pathways in acute myelocytic leukemia

26 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3072558

cDNA cloning, genomic organization and expression of the novel human metallophosphoesterase gene MPPE1 on chromosome 18p11.2.

26 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3072558

Estimating node degree in bait-prey graphs

26 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3072558

Evolutionary constraints on hub and non-hub proteins in human protein interaction network: insight from protein connectivity and intrinsic disorder

9 December 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/21367871

12 December 2020

inferred from PubMed ID database lookup

Acute myelogenous leukemia

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/21367871

12 December 2020

inferred from PubMed ID database lookup

The Effect of Gentamicin on Cytoskeletons in the Vestibular Sensory Cells: A High-resolution Scanning Electron Microscopic Investigation

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/21367871

12 December 2020

inferred from PubMed ID database lookup

Identifiers

DOI

10.1093/BIOINFORMATICS/BTR099

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21367871%20AND%20SRC:MED&resulttype=core&format=json

journals/bioinformatics/FoxHBS11

24 January 2020

DBLP publication ID

1 reference

DBLP Dataset 2021-01-02

release_k3sefxavqrdlrgkrvtbcsifkka

28 January 2021

Fatcat ID

1 reference

Fatcat

https://api.fatcat.wiki/v0/release/k3sefxavqrdlrgkrvtbcsifkka

24 November 2022

mapped directly with Wikidata item

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21367871%20AND%20SRC:MED&resulttype=core&format=json

24 January 2020

PubMed publication ID

21367871

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21367871%20AND%20SRC:MED&resulttype=core&format=json