Molecular crowding accelerates ribozyme docking and catalysis (Q34778273)

25399908

4 August 2017

title

Molecular crowding accelerates ribozyme docking and catalysis (English)

1 reference

4 August 2017

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1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25399908%20AND%20SRC:MED&resulttype=core&format=json

8 June 2020

David Rueda

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25399908%20AND%20SRC:MED&resulttype=core&format=json

8 June 2020

language of work or name

English

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publication date

21 November 2014

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Journal of the American Chemical Society

4 August 2017

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inferred from page(s)

published in

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8 June 2020

volume

136

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8 June 2020

issue

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25399908%20AND%20SRC:MED&resulttype=core&format=json

8 June 2020

page(s)

16700-16703

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25399908%20AND%20SRC:MED&resulttype=core&format=json

Molecular-crowding effects on single-molecule RNA folding/unfolding thermodynamics and kinetics

8 June 2020

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1 reference

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7 July 2018

1 reference

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Increased ribozyme activity in crowded solutions

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4277754

Molecular crowding favors reactivity of a human ribozyme under physiological ionic conditions

7 July 2018

1 reference

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Crowders perturb the entropy of RNA energy landscapes to favor folding

7 July 2018

1 reference

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Specific recognition and stabilization of monomeric and multimeric G-quadruplexes by cationic porphyrin TMPipEOPP under molecular crowding conditions

7 July 2018

1 reference

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Ion-mediated RNA structural collapse: effect of spatial confinement.

7 July 2018

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Allosteric tertiary interactions preorganize the c-di-GMP riboswitch and accelerate ligand binding

7 July 2018

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Molecular crowding stabilizes folded RNA structure by the excluded volume effect

7 July 2018

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Compact intermediates in RNA folding.

7 July 2018

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RNA looping by PTB: Evidence using FRET and NMR spectroscopy for a role in splicing repression

7 July 2018

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RNA folding dynamics by single-molecule fluorescence resonance energy transfer

7 July 2018

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A rugged free energy landscape separates multiple functional RNA folds throughout denaturation

7 July 2018

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Molecular crowding effects on structure and stability of DNA.

7 July 2018

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An experimental study of GFP-based FRET, with application to intrinsically unstructured proteins

7 July 2018

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Satellite tobacco ringspot virus RNA: A subset of the RNA sequence is sufficient for autolytic processing

7 July 2018

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Molecular crowding enhances native state stability and refolding rates of globular proteins

7 July 2018

1 reference

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Single-molecule enzymology of RNA: essential functional groups impact catalysis from a distance

7 July 2018

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Protein folding by the effects of macromolecular crowding

7 July 2018

1 reference

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A four-way junction accelerates hairpin ribozyme folding via a discrete intermediate

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4277754

Single-molecule transition-state analysis of RNA folding

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4277754

The chemical repertoire of natural ribozymes

7 July 2018

1 reference

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Correlating structural dynamics and function in single ribozyme molecules

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4277754

Metal ion binding and the folding of the hairpin ribozyme

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4277754

Macromolecular crowding: obvious but underappreciated

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4277754

Beyond kinetic traps in RNA folding

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4277754

Cytoarchitecture and physical properties of cytoplasm: volume, viscosity, diffusion, intracellular surface area

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4277754

The hammerhead, hairpin and VS ribozymes are catalytically proficient in monovalent cations alone

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4277754

Influence of excluded volume upon macromolecular structure and associations in 'crowded' media

7 July 2018

1 reference

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Macromolecular crowding: biochemical, biophysical, and physiological consequences

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4277754

Effect of macromolecular crowding upon the structure and function of an enzyme: glyceraldehyde-3-phosphate dehydrogenase

7 July 2018

1 reference

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RNA catalysis through compartmentalization.

7 July 2018

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Molecular crowding: analysis of effects of high concentrations of inert cosolutes on biochemical equilibria and rates in terms of volume exclusion.

26 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4277754

Crowding effect on helix-coil transition: beyond entropic stabilization

26 October 2018

1 reference

12 December 2020

The hairpin ribozyme: structure, assembly and catalysis

1 reference

12 December 2020

The hairpin ribozyme: structure, assembly and catalysis

1 reference

12 December 2020

Facilitation of RNA enzyme activity in the molecular crowding media of cosolutes

1 reference

12 December 2020

Human telomeric G-quadruplex formed from duplex under near physiological conditions: spectroscopic evidence and kinetics

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12 December 2020

Identifiers

DOI

10.1021/JA5073146

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25399908%20AND%20SRC:MED&resulttype=core&format=json

8 June 2020

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25399908%20AND%20SRC:MED&resulttype=core&format=json

8 June 2020

25399908

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25399908%20AND%20SRC:MED&resulttype=core&format=json