Matrix attachment regions and structural colinearity in the genomes of two grass species. (Q34655072)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:9443968%20AND%20SRC:MED&resulttype=core&format=json

8 November 2019

title

Matrix attachment regions and structural colinearity in the genomes of two grass species (English)

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8 November 2019

Z Avramova

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8 November 2019

M Chen

series ordinal

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8 November 2019

language of work or name

English

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publication date

1 February 1998

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8 November 2019

published in

Nucleic Acids Research

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8 November 2019

volume

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8 November 2019

issue

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8 November 2019

page(s)

761-767

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The organisation of chromatin loops: characterization of a scaffold attachment site.

8 November 2019

cites work

1 reference

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The MAR-Mediated Reduction in Position Effect Can Be Uncoupled from Copy Number-Dependent Expression in Transgenic Plants.

7 July 2018

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Analysis of the Chromatin Domain Organisation Around the Plastocyanin Gene Reveals an MAR-Specific Sequence Element in Arabidopsis Thaliana

7 July 2018

1 reference

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Microcolinearity in sh2-homologous regions of the maize, rice, and sorghum genomes

7 July 2018

1 reference

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The heat shock cognate 80 gene of tomato is flanked by matrix attachment regions

7 July 2018

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Nested retrotransposons in the intergenic regions of the maize genome

7 July 2018

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LTR-retrotransposons and MITEs: important players in the evolution of plant genomes

7 July 2018

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High-level transgene expression in plant cells: effects of a strong scaffold attachment region from tobacco.

7 July 2018

1 reference

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Chromatin domains and prediction of MAR sequences.

7 July 2018

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Mapping of genomic DNA loop organization in a 500-kilobase region of the Drosophila X chromosome by the topoisomerase II-mediated DNA loop excision protocol

7 July 2018

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Isolation of matrices from maize leaf nuclei: identification of a matrix-binding site adjacent to the Adh1 gene

7 July 2018

1 reference

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Scaffold attachment regions increase reporter gene expression in stably transformed plant cells.

7 July 2018

1 reference

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DNA class organization on maize Adh1 yeast artificial chromosomes

7 July 2018

1 reference

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Binding specificity of a nuclear scaffold: supercoiled, single-stranded, and scaffold-attached-region DNA.

7 July 2018

1 reference

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The relationship between genetic and physical distances in the cloned a1-sh2 interval of the Zea mays L. genome.

7 July 2018

1 reference

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Rice-barley synteny and its application to saturation mapping of the barley Rpg1 region.

7 July 2018

1 reference

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Conservation of fine-scale DNA marker order in the genomes of rice and the Triticeae

7 July 2018

1 reference

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A novel matrix attachment region DNA binding motif identified using a random phage peptide library

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=147314

Selfish DNA: the ultimate parasite

7 July 2018

1 reference

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Organization of the higher-order chromatin loop: specific DNA attachment sites on nuclear scaffold

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=147314

Matrix attachment regions are positioned near replication initiation sites, genes, and an interamplicon junction in the amplified dihydrofolate reductase domain of Chinese hamster ovary cells

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=147314

Genes and loops in 320,000 base-pairs of the Drosophila melanogaster chromosome.

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=147314

Chromosomal loop anchorage of the kappa immunoglobulin gene occurs next to the enhancer in a region containing topoisomerase II sites

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=147314

Specific recognition of cruciform DNA by nuclear protein HMG1.

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=147314

A consensus sequence for cleavage by vertebrate DNA topoisomerase II.

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=147314

Specific inhibition of DNA binding to nuclear scaffolds and histone H1 by distamycin. The role of oligo(dA).oligo(dT) tracts

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=147314

Bent DNA is a structural feature of scaffold-attached regions in Drosophila melanogaster interphase nuclei.

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=147314

A non-curved chicken lysozyme 5' matrix attachment site is 3' followed by a strongly curved DNA sequence

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=147314

Supragenic loop organization: mapping in Drosophila embryos, of scaffold-associated regions on a 800 kilobase DNA continuum cloned from the 14B-15B first chromosome region

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=147314

The chicken lysozyme 5' matrix attachment region increases transcription from a heterologous promoter in heterologous cells and dampens position effects on the expression of transfected genes

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=147314

Hierarchical binding of DNA fragments derived from scaffold-attached regions: correlation of properties in vitro and function in vivo

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=147314

Torsional stress stabilizes extended base unpairing in suppressor sites flanking immunoglobulin heavy chain enhancer

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=147314

Studies of an 800-kilobase DNA stretch of the Drosophila X chromosome: comapping of a subclass of scaffold-attached regions with sequences able to replicate autonomously in Saccharomyces cerevisiae

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=147314

Nuclear matrix attachment occurs in several regions of the IgH locus

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=147314

Dynamic chromatin: The regulatory domain organization of eukaryotic gene loci

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=147314

Biological significance of unwinding capability of nuclear matrix-associating DNAs

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=147314

Characterization of a plant scaffold attachment region in a DNA fragment that normalizes transgene expression in tobacco

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=147314

Matrix-attachment regions can impart position-independent regulation of a tissue-specific gene in transgenic mice

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=147314

Interaction of MAR-sequences with nuclear matrix proteins

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=147314

Gene identification in a complex chromosomal continuum by local genomic cross-referencing.

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=147314

Sequence composition and organization in the Sh2/A1-homologous region of rice

26 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=147314

Matrix attachment regions and transcribed sequences within a long chromosomal continuum containing maize Adh1.

26 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=147314

Meiotic recombination break points resolve at high rates at the 5' end of a maize coding sequence

26 October 2018

1 reference

12 December 2020

Reduced Position Effect in Mature Transgenic Plants Conferred by the Chicken Lysozyme Matrix-Associated Region

1 reference

12 December 2020

A nuclear DNA attachment element mediates elevated and position-independent gene activity

1 reference

12 December 2020

The transformation booster sequence from Petunia hybrida is a retrotransposon derivative that binds to the nuclear scaffold

1 reference

12 December 2020

Homoeologous relationships of rice, wheat and maize chromosomes

1 reference

12 December 2020

Identifiers

DOI

10.1093/NAR/26.3.761

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:9443968%20AND%20SRC:MED&resulttype=core&format=json

8 November 2019

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:9443968%20AND%20SRC:MED&resulttype=core&format=json

8 November 2019

PubMed publication ID

9443968

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:9443968%20AND%20SRC:MED&resulttype=core&format=json