Lighter: fast and memory-efficient sequencing error correction without counting (Q34591347)

From Wikidata

Jump to navigation Jump to search

scientific article

edit

Language	Label	Description	Also known as
English	Lighter: fast and memory-efficient sequencing error correction without counting	scientific article

Statements

instance of

scholarly article

1 reference

stated in

Europe PubMed Central

PubMed publication ID

25398208

retrieved

3 August 2017

title

Lighter: fast and memory-efficient sequencing error correction without counting (English)

1 reference

stated in

Europe PubMed Central

PubMed publication ID

25398208

retrieved

3 August 2017

author name string

Li Song

series ordinal

1

1 reference

stated in

Europe PubMed Central

PubMed publication ID

25398208

retrieved

3 August 2017

Liliana Florea

series ordinal

2

1 reference

stated in

Europe PubMed Central

PubMed publication ID

25398208

retrieved

3 August 2017

Ben Langmead

series ordinal

3

1 reference

stated in

Europe PubMed Central

PubMed publication ID

25398208

retrieved

3 August 2017

publication date

1 January 2014

1 reference

stated in

Europe PubMed Central

PubMed publication ID

25398208

retrieved

3 August 2017

published in

Genome Biology

1 reference

stated in

Europe PubMed Central

PubMed publication ID

25398208

retrieved

3 August 2017

volume

15

1 reference

stated in

Europe PubMed Central

PubMed publication ID

25398208

retrieved

3 August 2017

issue

11

1 reference

stated in

Europe PubMed Central

PubMed publication ID

25398208

retrieved

3 August 2017

page(s)

509

1 reference

stated in

Europe PubMed Central

PubMed publication ID

25398208

retrieved

3 August 2017

cites work

These are not the k-mers you are looking for: efficient online k-mer counting using a probabilistic data structure

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4248469

retrieved

7 July 2018

BLESS: bloom filter-based error correction solution for high-throughput sequencing reads.

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4248469

retrieved

7 July 2018

SOAPdenovo2: an empirically improved memory-efficient short-read de novo assembler

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4248469

retrieved

7 July 2018

QUAST: quality assessment tool for genome assemblies

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4248469

retrieved

7 July 2018

Musket: a multistage k-mer spectrum-based error corrector for Illumina sequence data

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4248469

retrieved

7 July 2018

Compression of next-generation sequencing reads aided by highly efficient de novo assembly.

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4248469

retrieved

7 July 2018

Scaling metagenome sequence assembly with probabilistic de Bruijn graphs

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4248469

retrieved

7 July 2018

Fast gapped-read alignment with Bowtie 2

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4248469

retrieved

7 July 2018

ART: a next-generation sequencing read simulator.

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4248469

retrieved

7 July 2018

GAGE: A critical evaluation of genome assemblies and assembly algorithms

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4248469

retrieved

7 July 2018

Efficient counting of k-mers in DNA sequences using a bloom filter

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4248469

retrieved

7 July 2018

Error correction of high-throughput sequencing datasets with non-uniform coverage

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4248469

retrieved

7 July 2018

Field guide to next‐generation DNA sequencers

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4248469

retrieved

7 July 2018

Sequence-specific error profile of Illumina sequencers

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4248469

retrieved

7 July 2018

ECHO: a reference-free short-read error correction algorithm

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4248469

retrieved

7 July 2018

A fast, lock-free approach for efficient parallel counting of occurrences of k-mers

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4248469

retrieved

7 July 2018

HiTEC: accurate error correction in high-throughput sequencing data

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4248469

retrieved

7 July 2018

Quake: quality-aware detection and correction of sequencing errors

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4248469

retrieved

7 July 2018

A parallel algorithm for error correction in high-throughput short-read data on CUDA-enabled graphics hardware

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4248469

retrieved

7 July 2018

SHREC: a short-read error correction method

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4248469

retrieved

7 July 2018

Velvet: algorithms for de novo short read assembly using de Bruijn graphs

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4248469

retrieved

7 July 2018

An Eulerian path approach to DNA fragment assembly

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4248469

retrieved

7 July 2018

KmerStream: streaming algorithms for k-mer abundance estimation

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4248469

retrieved

27 October 2018

Informed and automated k-mer size selection for genome assembly

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4248469

retrieved

27 October 2018

Correcting errors in short reads by multiple alignments

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4248469

retrieved

27 October 2018

Reptile: representative tiling for short read error correction

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4248469

retrieved

27 October 2018

Fragment assembly with short reads

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4248469

retrieved

27 October 2018

Identifiers

DOI

10.1186/PREACCEPT-9663167051308943

1 reference

stated in

Europe PubMed Central

PubMed publication ID

25398208

retrieved

3 August 2017

PMC publication ID

4248469

1 reference

stated in

Europe PubMed Central

PubMed publication ID

25398208

retrieved

3 August 2017

PubMed publication ID

25398208

1 reference

stated in

Europe PubMed Central

PubMed publication ID

25398208

retrieved

3 August 2017

 

Sitelinks

Wikipedia(0 entries)

edit

Wikibooks(0 entries)

edit

Wikinews(0 entries)

edit

Wikiquote(0 entries)

edit

Wikisource(0 entries)

edit

Wikiversity(0 entries)

edit

Wikivoyage(0 entries)

edit

Wiktionary(0 entries)

edit

Multilingual sites(0 entries)

edit

Retrieved from "https://www.wikidata.org/w/index.php?title=Q34591347&oldid=2196840829"