Non-nearest-neighbor dependence of the stability for RNA group II single-nucleotide bulge loops (Q34415400)

2 August 2017

title

Non-nearest-neighbor dependence of the stability for RNA group II single-nucleotide bulge loops (English)

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nearest neighbour algorithm

2 August 2017

main subject

1 reference

Martin J Serra

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2 August 2017

Michael D McCann

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2 August 2017

Geoffery F S Lim

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2 August 2017

Michelle L Manni

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2 August 2017

Julie Estes

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2 August 2017

Kelly A Klapec

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2 August 2017

Gregory D Frattini

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2 August 2017

Robert J Knarr

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2 August 2017

Jessica L Gratton

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2 August 2017

language of work or name

English

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publication date

18 November 2010

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2 August 2017

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2 August 2017

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2 August 2017

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2 August 2017

page(s)

108-119

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Energetic signatures of single base bulges: thermodynamic consequences and biological implications.

2 August 2017

cites work

1 reference

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Bulged adenosine influence on the RNA duplex conformation in solution

6 July 2018

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In-line probing analysis of riboswitches

6 July 2018

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Non-nearest-neighbor dependence of the stability for RNA bulge loops based on the complete set of group I single-nucleotide bulge loops

6 July 2018

1 reference

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Trans-acting glmS catalytic riboswitch: locked and loaded

6 July 2018

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A set of nearest neighbor parameters for predicting the enthalpy change of RNA secondary structure formation

6 July 2018

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Characterization of RNase R-digested cellular RNA source that consists of lariat and circular RNAs from pre-mRNA splicing.

6 July 2018

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6 July 2018

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6 July 2018

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6 July 2018

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6 July 2018

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Oligonucleotide based artificial nuclease (OBAN) systems. Bulge size dependence and positioning of catalytic group in cleavage of RNA-bulges

6 July 2018

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6 July 2018

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6 July 2018

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Relationship between internucleotide linkage geometry and the stability of RNA.

6 July 2018

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6 July 2018

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Thermodynamic parameters for an expanded nearest-neighbor model for formation of RNA duplexes with Watson-Crick base pairs

6 July 2018

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Hierarchy and dynamics of RNA folding

6 July 2018

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Investigation of the structural basis for thermodynamic stabilities of tandem GU mismatches: solution structure of (rGAGGUCUC)2 by two-dimensional NMR and simulated annealing

6 July 2018

1 reference

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Mutations of the two-nucleotide bulge of D5 of a group II intron block splicing in vitro and in vivo: phenotypes and suppressor mutations

6 July 2018

1 reference

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6 July 2018

1 reference

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Kinking of DNA and RNA by base bulges

6 July 2018

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Distinct requirements for primary sequence in the 5'- and 3'-part of a bulge in the hepatitis B virus RNA encapsidation signal revealed by a combined in vivo selection/in vitro amplification system.

6 July 2018

1 reference

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6 July 2018

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RNA structure, not sequence, determines the 5' splice-site specificity of a group I intron

6 July 2018

1 reference

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Improved free-energy parameters for predictions of RNA duplex stability

6 July 2018

1 reference

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Thermodynamic and spectroscopic study of bulge loops in oligoribonucleotides.

6 July 2018

1 reference

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Thermodynamic parameters based on a nearest-neighbor model for DNA sequences with a single-bulge loop

6 July 2018

1 reference

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Thermodynamic parameters for an expanded nearest-neighbor model for the formation of RNA duplexes with single nucleotide bulges

27 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3004052

The effect of base sequence on the stability of RNA and DNA single base bulges.

27 October 2018

1 reference

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Thermodynamics and NMR of Internal G·T Mismatches in DNA

27 October 2018

1 reference

12 December 2020

Self-splicing of group II introns in vitro: mapping of the branch point and mutational inhibition of lariat formation

1 reference

12 December 2020

A bulge structure in HIV-1 TAR RNA is required for Tat binding and Tat-mediated trans-activation

1 reference

12 December 2020

Refolded HIV-1 tat protein protects both bulge and loop nucleotides in TAR RNA from ribonucleolytic cleavage

1 reference

12 December 2020

A model for the stabilities of RNA hairpins based on a study of the sequence dependence of stability for hairpins of six nucleotides

1 reference

12 December 2020

Identifiers

DOI

10.1261/RNA.2306911

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2 August 2017

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2 August 2017

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