Assessment of transcript reconstruction methods for RNA-seq (Q34382192)

1 August 2017

title

Assessment of transcript reconstruction methods for RNA-seq (English)

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1 August 2017

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1 August 2017

Jennifer Harrow

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Felix Kokocinski

series ordinal

object named as

Felix Kokocinski

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Roderic Guigó i Serra

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object named as

Roderic Guigó

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Tamara Steijger

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object named as

Tamara Steijger

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Pär G Engström

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Josep F Abril

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Paul Bertone

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RGASP Consortium

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1 August 2017

publication date

3 November 2013

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1 August 2017

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1 August 2017

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1 August 2017

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1 August 2017

page(s)

1177-1184

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TopHat2: accurate alignment of transcriptomes in the presence of insertions, deletions and gene fusions

1 August 2017

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6 July 2018

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6 July 2018

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6 July 2018

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High-fidelity promoter profiling reveals widespread alternative promoter usage and transposon-driven developmental gene expression

6 July 2018

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6 July 2018

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6 July 2018

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6 July 2018

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6 July 2018

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6 July 2018

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6 July 2018

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6 July 2018

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6 July 2018

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6 July 2018

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6 July 2018

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Analysis and design of RNA sequencing experiments for identifying isoform regulation

6 July 2018

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Scaffolding a Caenorhabditis nematode genome with RNA-seq

6 July 2018

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De novo assembly and analysis of RNA-seq data.

6 July 2018

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rQuant.web: a tool for RNA-Seq-based transcript quantitation

6 July 2018

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Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation

6 July 2018

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Fast and SNP-tolerant detection of complex variants and splicing in short reads

6 July 2018

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6 July 2018

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TopHat: discovering splice junctions with RNA-Seq

6 July 2018

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Mapping and quantifying mammalian transcriptomes by RNA-Seq

6 July 2018

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Velvet: algorithms for de novo short read assembly using de Bruijn graphs

6 July 2018

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6 July 2018

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AUGUSTUS: ab initio prediction of alternative transcripts

6 July 2018

1 reference

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Automated generation of heuristics for biological sequence comparison

6 July 2018

1 reference

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A large-scale analysis of mRNA polyadenylation of human and mouse genes

6 July 2018

1 reference

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6 July 2018

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Identification of novel transcripts in annotated genomes using RNA-Seq

6 July 2018

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Using geneid to identify genes

21 January 2018

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RNA-Seq Read Alignments with PALMapper

27 October 2018

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Systematic evaluation of spliced alignment programs for RNA-seq data

27 October 2018

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inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1038/NMETH.2714

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Dimensions Publication ID

1 August 2017

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1 August 2017

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