Modifications and deletions of helices within the hairpin ribozyme-substrate complex: an active ribozyme lacking helix 1. (Q34366912)

1 August 2017

title

Modifications and deletions of helices within the hairpin ribozyme-substrate complex: an active ribozyme lacking helix 1. (English)

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1 August 2017

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François Major

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1 August 2017

Robert Pinard

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1 August 2017

Dominic Lambert

series ordinal

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1 August 2017

Gulnar Pothiawala

series ordinal

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1 August 2017

John M Burke

series ordinal

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1 August 2017

language of work or name

English

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publication date

1 March 2004

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1 August 2017

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1 August 2017

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1 August 2017

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1 August 2017

page(s)

395-402

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Functional involvement of G8 in the hairpin ribozyme cleavage mechanism

1 August 2017

cites work

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1370935

Structural dynamics of catalytic RNA highlighted by fluorescence resonance energy transfer.

6 July 2018

1 reference

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Computational methods for RNA structure determination

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1370935

Crystal structure of a hairpin ribozyme-inhibitor complex with implications for catalysis

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1370935

The folding of the hairpin ribozyme: dependence on the loops and the junction

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1370935

Structure and function of the hairpin ribozyme

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1370935

Tertiary structure stabilization promotes hairpin ribozyme ligation

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1370935

Folding and catalysis by the hairpin ribozyme

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1370935

Alignment of the two domains of the hairpin ribozyme-substrate complex defined by interdomain photoaffinity crosslinking

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1370935

Solution structure of the loop B domain from the hairpin ribozyme

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1370935

Structural basis for heterogeneous kinetics: reengineering the hairpin ribozyme

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1370935

Tertiary structure formation in the hairpin ribozyme monitored by fluorescence resonance energy transfer

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1370935

Solution structure of loop A from the hairpin ribozyme from tobacco ringspot virus satellite

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1370935

Reconstitution of hairpin ribozyme activity following separation of functional domains

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1370935

The combination of symbolic and numerical computation for three-dimensional modeling of RNA.

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1370935

The hairpin ribozyme substrate binding-domain: a highly constrained D-shaped conformation

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1370935

Stability of hairpin ribozyme tertiary structure is governed by the interdomain junction

27 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1370935

Substrate selection rules for the hairpin ribozyme determined by in vitro selection, mutation, and analysis of mismatched substrates.

27 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1370935

Structural basis for the guanosine requirement of the hairpin ribozyme

27 October 2018

1 reference

12 December 2020

A conformational change in the "loop E-like" motif of the hairpin ribozyme is coincidental with domain docking and is essential for catalysis

1 reference

12 December 2020

Structure-mapping of the hairpin ribozyme. Magnesium-dependent folding and evidence for tertiary interactions within the ribozyme-substrate complex

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12 December 2020

Inter-domain cross-linking and molecular modelling of the hairpin ribozyme

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12 December 2020

The hairpin ribozyme: structure, assembly and catalysis

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12 December 2020

The solvent-protected core of the hairpin ribozyme-substrate complex

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12 December 2020

Global structure and flexibility of hairpin ribozymes with extended terminal helices

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12 December 2020

The kinetic mechanism of the hairpin ribozyme in vivo: influence of RNA helix stability on intracellular cleavage kinetics

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12 December 2020

Identifiers

DOI

10.1261/RNA.5650904

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1 August 2017

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1 August 2017

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