Adaptive evolution: evaluating empirical support for theoretical predictions (Q34312048)

1 August 2017

title

Adaptive evolution: evaluating empirical support for theoretical predictions (English)

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1 August 2017

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Thomas Mitchell-Olds

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author name string

Carrie F Olson-Manning

series ordinal

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1 August 2017

Maggie R Wagner

series ordinal

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1 August 2017

Thomas Mitchell-Olds

series ordinal

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1 August 2017

publication date

1 December 2012

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1 August 2017

published in

Nature Reviews Genetics

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1 August 2017

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1 August 2017

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1 August 2017

page(s)

867-877

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A gain-of-function polymorphism controlling complex traits and fitness in nature.

1 August 2017

cites work

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6 July 2018

Experimental evolution

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Butterfly genome reveals promiscuous exchange of mimicry adaptations among species

6 July 2018

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Evolution and functional impact of rare coding variation from deep sequencing of human exomes

6 July 2018

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Recent explosive human population growth has resulted in an excess of rare genetic variants

6 July 2018

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Adaptive evolution and effective population size in wild house mice

6 July 2018

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The genomic basis of adaptive evolution in threespine sticklebacks

6 July 2018

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Evidence for widespread positive and purifying selection across the European rabbit (Oryctolagus cuniculus) genome

6 July 2018

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Genome-wide scans provide evidence for positive selection of genes implicated in Lassa fever

6 July 2018

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Sex pheromone evolution is associated with differential regulation of the same desaturase gene in two genera of leafroller moths

6 July 2018

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Common variants show predicted polygenic effects on height in the tails of the distribution, except in extremely short individuals

6 July 2018

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The QTN program and the alleles that matter for evolution: all that's gold does not glitter

6 July 2018

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The effects of deleterious mutations on evolution at linked sites

6 July 2018

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Evolution of the TOR pathway

6 July 2018

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Molecular spandrels: tests of adaptation at the genetic level.

6 July 2018

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Copy-number variation: the balance between gene dosage and expression in Drosophila melanogaster.

6 July 2018

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Multiple reference genomes and transcriptomes for Arabidopsis thaliana

6 July 2018

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The shaping of modern human immune systems by multiregional admixture with archaic humans

6 July 2018

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Expression level drives the pattern of selective constraints along the insulin/Tor signal transduction pathway in Caenorhabditis

6 July 2018

1 reference

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Chromosomal rearrangements maintain a polymorphic supergene controlling butterfly mimicry.

6 July 2018

1 reference

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Weighing the evidence for adaptation at the molecular level

6 July 2018

1 reference

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Genetic adaptation of the antibacterial human innate immunity network

6 July 2018

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Parallel adaptive divergence among geographically diverse human populations

6 July 2018

1 reference

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Diminishing returns epistasis among beneficial mutations decelerates adaptation

6 July 2018

1 reference

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Adaptations to climate-mediated selective pressures in humans

6 July 2018

1 reference

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Prevalence of epistasis in the evolution of influenza A surface proteins

6 July 2018

1 reference

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Comparing the adaptive landscape across trait types: larger QTL effect size in traits under biotic selection

6 July 2018

1 reference

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Pervasive Adaptive Protein Evolution Apparent in Diversity Patterns around Amino Acid Substitutions in Drosophila simulans

6 July 2018

1 reference

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Classic selective sweeps were rare in recent human evolution

6 July 2018

1 reference

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Meta-analysis of Dense Genecentric Association Studies Reveals Common and Uncommon Variants Associated with Height

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3748133

Effective population size and the efficacy of selection on the X chromosomes of two closely related Drosophila species

6 July 2018

1 reference

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Comparative Genomics of the Vertebrate Insulin/TOR Signal Transduction Pathway: A Network-Level Analysis of Selective Pressures

6 July 2018

1 reference

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Pervasive Cryptic Epistasis in Molecular Evolution

6 July 2018

1 reference

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A Widespread Chromosomal Inversion Polymorphism Contributes to a Major Life-History Transition, Local Adaptation, and Reproductive Isolation

6 July 2018

1 reference

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Genome-wide analysis of a long-term evolution experiment with Drosophila

6 July 2018

1 reference

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De novo evolution of complex, global and hierarchical gene regulatory mechanisms

6 July 2018

1 reference

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Parallel adaptation: one or many waves of advance of an advantageous allele?

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3748133

Evidence that adaptation in Drosophila is not limited by mutation at single sites

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3748133

Genetic architecture of a feeding adaptation: garter snake (Thamnophis) resistance to tetrodotoxin bearing prey

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3748133

Natural selection shapes nucleotide polymorphism across the genome of the nematode Caenorhabditis briggsae

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3748133

Sequence space and the ongoing expansion of the protein universe

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3748133

Revisiting the Impact of Inversions in Evolution: From Population Genetic Markers to Drivers of Adaptive Shifts and Speciation?

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3748133

Human population differentiation is strongly correlated with local recombination rate

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3748133

The genetics of human adaptation: hard sweeps, soft sweeps, and polygenic adaptation

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3748133

Adaptive evolution of pelvic reduction in sticklebacks by recurrent deletion of a Pitx1 enhancer

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3748133

The evolution of control and distribution of adaptive mutations in a metabolic pathway

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3748133

Evolution of biomolecular networks: lessons from metabolic and protein interactions

6 July 2018

1 reference

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Demographic source-sink dynamics restrict local adaptation in Elliott's blueberry (Vaccinium elliottii).

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3748133

Biased gene conversion and the evolution of mammalian genomic landscapes

6 July 2018

1 reference

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From DNA sequence to transcriptional behaviour: a quantitative approach

6 July 2018

1 reference

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Pervasive natural selection in the Drosophila genome?

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3748133

Fundamental concepts in genetics: Effective population size and patterns of molecular evolution and variation

6 July 2018

1 reference

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Molecular and evolutionary history of melanism in North American gray wolves

6 July 2018

1 reference

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Network-level molecular evolutionary analysis of the insulin/TOR signal transduction pathway across 12 Drosophila genomes

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3748133

Adaptation from standing genetic variation

6 July 2018

1 reference

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Crystal structure of an ancient protein: evolution by conformational epistasis

6 July 2018

1 reference

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Adaptive variation in beach mice produced by two interacting pigmentation genes

6 July 2018

1 reference

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The frailty of adaptive hypotheses for the origins of organismal complexity

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3748133

The importance of bottlenecks in protein networks: correlation with gene essentiality and expression dynamics

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3748133

The evolutionary significance of cis-regulatory mutations

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3748133

Adaptive genic evolution in the Drosophila genomes

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3748133

Sub1A is an ethylene-response-factor-like gene that confers submergence tolerance to rice

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3748133

Darwinian evolution can follow only very few mutational paths to fitter proteins

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3748133

Soft sweeps II--molecular population genetics of adaptation from recurrent mutation or migration

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3748133

Nucleotide polymorphism and linkage disequilibrium in wild populations of the partial selfer Caenorhabditis elegans

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3748133

Directional positive selection on an allele of arbitrary dominance

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3748133

Chromosome inversions, local adaptation and speciation

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3748133

Recombination enhances protein adaptation in Drosophila melanogaster

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3748133

Perspective: Sign epistasis and genetic constraint on evolutionary trajectories

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3748133

A scan for positively selected genes in the genomes of humans and chimpanzees

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3748133

Widespread parallel evolution in sticklebacks by repeated fixation of Ectodysplasin alleles

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3748133

Adaptive molecular evolution in the opsin genes of rapidly speciating cichlid species

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3748133

Soft sweeps: molecular population genetics of adaptation from standing genetic variation

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3748133

Nucleotide diversity in gorillas

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3748133

On the probability of fixation of mutant genes in a population

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3748133

Natural selection on the olfactory receptor gene family in humans and chimpanzees

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3748133

Testing models of selection and demography in Drosophila simulans

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3748133

On the possibility of constructive neutral evolution

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3748133

The molecular basis of dominance.

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3748133

Slightly Deleterious Mutant Substitutions in Evolution

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3748133

The hitch-hiking effect of a favourable gene

6 July 2018

2 references

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3748133

6 July 2018

https://pubmed.ncbi.nlm.nih.gov/23154809

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Adaptive protein evolution at the Adh locus in Drosophila

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3748133

An abundance of rare functional variants in 202 drug target genes sequenced in 14,002 people

6 July 2018

1 reference

Whole-genome sequencing of multiple Arabidopsis thaliana populations

21 January 2018

1 reference

Evidence of adaptation from ancestral variation in young populations of beach mice

21 January 2018

1 reference

Experimental evolution reveals natural selection on standing genetic variation.

21 January 2018

1 reference

Consistent effects of a major QTL for thermal resistance in field-released Drosophila melanogaster.

21 January 2018

1 reference

Trans-acting small RNA determines dominance relationships in Brassica self-incompatibility

21 January 2018

1 reference

Network-level and population genetics analysis of the insulin/TOR signal transduction pathway across human populations

21 January 2018

1 reference

Adaptive evolution of metabolic pathways in Drosophila.

21 January 2018

1 reference

The same regulatory point mutation changed seed-dispersal structures in evolution and domestication

21 January 2018

1 reference

A Population Genetics Model for Multiple Quantitative Traits Exhibiting Pleiotropy and Epistasis

21 January 2018

1 reference

Long-Term Experimental Evolution in Escherichia coli. I. Adaptation and Divergence During 2,000 Generations

21 January 2018

1 reference

Negative epistasis between beneficial mutations in an evolving bacterial population

21 January 2018

1 reference

Polymorphism, Divergence, and the Role of Recombination in Saccharomyces cerevisiae Genome Evolution

21 January 2018

1 reference

Invasion of gene duplication through masking for maladaptive gene flow.

21 January 2018

1 reference

Regional heterogeneity and gene flow maintain variance in a quantitative trait within populations of lodgepole pine.

21 January 2018

1 reference

No effect of environmental heterogeneity on the maintenance of genetic variation in wing shape in Drosophila melanogaster

21 January 2018

1 reference

The rate of adaptive evolution in enteric bacteria

21 January 2018

1 reference

Quantifying the Slightly Deleterious Mutation Model of Molecular Evolution

21 January 2018

1 reference

THE GENETIC ARCHITECTURE OF ADAPTATION UNDER MIGRATION-SELECTION BALANCE

21 January 2018

1 reference

Evolutionary rates in partially self-fertilizing species

21 January 2018

1 reference

THE POPULATION GENETICS OF ADAPTATION: THE DISTRIBUTION OF FACTORS FIXED DURING ADAPTIVE EVOLUTION.

31 March 2020

1 reference

A systematic characterization of genes underlying both complex and Mendelian diseases

31 March 2020

1 reference

Evolution of flux control in the glucosinolate pathway in Arabidopsis thaliana.

31 March 2020

1 reference

The maintenance (or not) of polygenic variation by soft selection in heterogeneous environments

31 March 2020

1 reference

Quantifying the impact of gene flow on phenotype-environment mismatch: a demonstration with the scarlet monkeyflower Mimulus cardinalis

31 March 2020

1 reference

The effect of linkage on limits to artificial selection

31 March 2020

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/23154809

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

ERRATUM: Meta-analysis of Dense Genecentric Association Studies Reveals Common and Uncommon Variants Associated with Height

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/23154809

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1038/NRG3322

1 reference

Dimensions Publication ID

1 August 2017

0 references

1 reference

1 August 2017

1 reference