Mechanisms of ATP-dependent nucleosome sliding (Q34165927)

31 July 2017

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title

Mechanisms of ATP-dependent nucleosome sliding (English)

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31 July 2017

Gregory D Bowman

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31 July 2017

publication date

8 January 2010

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Current Opinion in Structural Biology

31 July 2017

published in

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31 July 2017

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31 July 2017

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31 July 2017

page(s)

73-81

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Dynamics of nucleosomes revealed by time-lapse atomic force microscopy

31 July 2017

cites work

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5 July 2018

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The biology of chromatin remodeling complexes

5 July 2018

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Structure of a RSC-nucleosome complex and insights into chromatin remodeling

5 July 2018

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Architecture of the SWI/SNF-nucleosome complex

5 July 2018

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5 July 2018

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Domain architecture of the catalytic subunit in the ISW2-nucleosome complex

5 July 2018

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The Dpb4 subunit of ISW2 is anchored to extranucleosomal DNA.

5 July 2018

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DNA stretching and extreme kinking in the nucleosome core

5 July 2018

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Conformational flexibility in the chromatin remodeler RSC observed by electron microscopy and the orthogonal tilt reconstruction method

5 July 2018

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Mechanisms of ATP dependent chromatin remodeling

5 July 2018

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Dependency of ISW1a chromatin remodeling on extranucleosomal DNA.

5 July 2018

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DNA translocation and loop formation mechanism of chromatin remodeling by SWI/SNF and RSC.

5 July 2018

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Effect of force on mononucleosomal dynamics

5 July 2018

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Regulation of ISW2 by concerted action of histone H4 tail and extranucleosomal DNA.

5 July 2018

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Chromatin remodelling: the industrial revolution of DNA around histones

5 July 2018

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Chromatin remodeling by ISW2 and SWI/SNF requires DNA translocation inside the nucleosome

5 July 2018

1 reference

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Direct observation of DNA distortion by the RSC complex

5 July 2018

1 reference

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Positively charged surfaces increase the flexibility of DNA.

5 July 2018

1 reference

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Fast, long-range, reversible conformational fluctuations in nucleosomes revealed by single-pair fluorescence resonance energy transfer

5 July 2018

1 reference

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Chromatin remodeling by DNA bending, not twisting

5 July 2018

1 reference

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Rapid spontaneous accessibility of nucleosomal DNA.

5 July 2018

1 reference

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Functional role of extranucleosomal DNA and the entry site of the nucleosome in chromatin remodeling by ISW2.

5 July 2018

1 reference

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Nucleosomes facilitate their own invasion

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2947954

Topography of the ISW2-nucleosome complex: insights into nucleosome spacing and chromatin remodeling

5 July 2018

1 reference

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Nucleosome remodeling: one mechanism, many phenomena?

5 July 2018

1 reference

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Crystal structures of histone Sin mutant nucleosomes reveal altered protein-DNA interactions

5 July 2018

1 reference

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Sin mutations alter inherent nucleosome mobility

5 July 2018

1 reference

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Dynamic Properties of Nucleosomes during Thermal and ATP-Driven Mobilization

5 July 2018

1 reference

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Models for chromatin remodeling: a critical comparison

5 July 2018

1 reference

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The structure of DNA in the nucleosome core

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2947954

SWI/SNF unwraps, slides, and rewraps the nucleosome

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2947954

Crystal structures of nucleosome core particles in complex with minor groove DNA-binding ligands

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2947954

hSWI/SNF-catalyzed nucleosome sliding does not occur solely via a twist-diffusion mechanism

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2947954

Chromatin remodeling by RSC involves ATP-dependent DNA translocation

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2947954

Mechanical disruption of individual nucleosomes reveals a reversible multistage release of DNA.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2947954

Role of DNA sequence in nucleosome stability and dynamics

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2947954

Histone tails modulate nucleosome mobility and regulate ATP-dependent nucleosome sliding by NURF

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2947954

Generation of superhelical torsion by ATP-dependent chromatin remodeling activities

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2947954

Critical role for the histone H4 N terminus in nucleosome remodeling by ISWI.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2947954

Crystal structure of the nucleosome core particle at 2.8 Å resolution

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2947954

Ionic effects on the elasticity of single DNA molecules

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2947954

Amino acid substitutions in the structured domains of histones H3 and H4 partially relieve the requirement of the yeast SWI/SNF complex for transcription

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2947954

The nucleosomal core histone octamer at 3.1 A resolution: a tripartite protein assembly and a left-handed superhelix

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2947954

Counterion-induced condensation of deoxyribonucleic acid. A light-scattering study

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2947954

High-resolution dynamic mapping of histone-DNA interactions in a nucleosome

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2947954

The chromatin-remodeling enzyme ACF is an ATP-dependent DNA length sensor that regulates nucleosome spacing

28 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2947954

Probing SWI/SNF remodeling of the nucleosome by unzipping single DNA molecules.

28 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2947954

The nucleosome: a transparent, slippery, sticky and yet stable DNA-protein complex.

28 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2947954

Chromatin remodeling through directional DNA translocation from an internal nucleosomal site

28 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2947954

A 'loop recapture' mechanism for ACF-dependent nucleosome remodeling

28 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2947954

Spatial contacts and nucleosome step movements induced by the NURF chromatin remodeling complex

28 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2947954

Spontaneous sharp bending of double-stranded DNA.

28 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2947954

SWI/SNF chromatin remodeling requires changes in DNA topology

28 October 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/20060707

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Polymer reptation and nucleosome repositioning

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/20060707

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Chromatin Dynamics: Nucleosomes go Mobile through Twist Defects

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/20060707

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1016/J.SBI.2009.12.002

1 reference

31 July 2017

1 reference

31 July 2017

1 reference