Agent-based models in translational systems biology. (Q34137569)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:20835989%20AND%20SRC:MED&resulttype=core&format=json

13 February 2020

title

Agent-based models in translational systems biology (English)

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:20835989%20AND%20SRC:MED&resulttype=core&format=json

13 February 2020

1 reference

1 reference

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13 February 2020

Yoram Vodovotz

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:20835989%20AND%20SRC:MED&resulttype=core&format=json

13 February 2020

Qi Mi

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:20835989%20AND%20SRC:MED&resulttype=core&format=json

13 February 2020

Joyeeta Dutta-Moscato

series ordinal

1 reference

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13 February 2020

publication date

1 September 2009

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:20835989%20AND%20SRC:MED&resulttype=core&format=json

Wiley interdisciplinary reviews. Systems biology and medicine

13 February 2020

published in

1 reference

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13 February 2020

volume

1 reference

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13 February 2020

issue

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:20835989%20AND%20SRC:MED&resulttype=core&format=json

13 February 2020

page(s)

159-171

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:20835989%20AND%20SRC:MED&resulttype=core&format=json

Agent-based model of therapeutic adipose-derived stromal cell trafficking during ischemia predicts ability to roll on P-selectin.

13 February 2020

cites work

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3640333

Essential operating principles for tumor spheroid growth

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3640333

A model of TLR4 signaling and tolerance using a qualitative, particle-event-based method: introduction of spatially configured stochastic reaction chambers (SCSRC).

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3640333

A patient-specific in silico model of inflammation and healing tested in acute vocal fold injury

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3640333

Introduction of an agent-based multi-scale modular architecture for dynamic knowledge representation of acute inflammation

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3640333

Translational systems biology of inflammation

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3640333

Translational systems biology: introduction of an engineering approach to the pathophysiology of the burn patient

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3640333

Coarse-grained molecular simulation of diffusion and reaction kinetics in a crowded virtual cytoplasm

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3640333

Animal cell differentiation patterns suppress somatic evolution

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3640333

28 July 2018

Executable cell biology

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3640333

The Basic Immune Simulator: an agent-based model to study the interactions between innate and adaptive immunity

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3640333

Towards a theory of biological robustness

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3640333

Combining experiments with multi-cell agent-based modeling to study biological tissue patterning

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3640333

Multi-cell agent-based simulation of the microvasculature to study the dynamics of circulating inflammatory cell trafficking.

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3640333

Dynamics of in silico leukocyte rolling, activation, and adhesion

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3640333

Evidence-based modeling of critical illness: an initial consensus from the Society for Complexity in Acute Illness

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3640333

Formation of cysts by alveolar type II cells in three-dimensional culture reveals a novel mechanism for epithelial morphogenesis

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3640333

Simulating properties of in vitro epithelial cell morphogenesis

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3640333

Robustness trade-offs and host-microbial symbiosis in the immune system

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3640333

Stochastic regulation in early immune response

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3640333

Pattern-oriented modeling of agent-based complex systems: lessons from ecology

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3640333

Simulating the impact of a molecular 'decision-process' on cellular phenotype and multicellular patterns in brain tumors.

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3640333

In silico experiments of existing and hypothetical cytokine-directed clinical trials using agent-based modeling

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3640333

Agent-based computational modeling of wounded epithelial cell monolayers.

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3640333

Multicellular computer simulation of morphogenesis: blastocoel roof thinning and matrix assembly in Xenopus laevis.

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3640333

Multicellular simulation predicts microvascular patterning and in silico tissue assembly

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3640333

Agent-based modeling: a revolution?

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3640333

Agent-based computer simulation and sirs: building a bridge between basic science and clinical trials.

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3640333

28 July 2018

The Hallmarks of Cancer

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3640333

Concepts for developing a collaborative in silico model of the acute inflammatory response using agent-based modeling

28 July 2018

1 reference

Dichotomies between computational and mathematical models

21 January 2018

1 reference

Agent-based modeling: methods and techniques for simulating human systems

21 January 2018

1 reference

Development of a three-dimensional multiscale agent-based tumor model: simulating gene-protein interaction profiles, cell phenotypes and multicellular patterns in brain cancer.

21 January 2018

1 reference

Physiologically based synthetic models of hepatic disposition

21 January 2018

1 reference

Transcriptional stochasticity in gene expression.

21 January 2018

1 reference

Agent-based Simulation Platforms: Review and Development Recommendations

21 January 2018

1 reference

Mechanistic simulations of inflammation: current state and future prospects.

21 January 2018

1 reference

Formal agent-based modelling of intracellular chemical interactions.

21 January 2018

1 reference

Introducing spatial information into predictive NF-kappaB modelling--an agent-based approach

21 January 2018

1 reference

Pattern of self-organization in tumour systems: complex growth dynamics in a novel brain tumour spheroid model

21 January 2018

1 reference

Agent-based model of inflammation and wound healing: insights into diabetic foot ulcer pathology and the role of transforming growth factor-beta1.

21 January 2018

1 reference

Evolutionary game theory in an agent-based brain tumor model: exploring the 'Genotype-Phenotype' link

21 January 2018

1 reference

The effects of EGF-receptor density on multiscale tumor growth patterns.

21 January 2018

1 reference

Simulating the hallmarks of cancer

21 January 2018

1 reference

Cancer as an evolutionary and ecological process

21 January 2018

1 reference

Simulating in vitro epithelial morphogenesis in multiple environments.

21 January 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3640333

An agent-based computational approach for representing aspects of in vitro multi-cellular tumor spheroid growth

28 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3640333

Equation-free: The computer-aided analysis of complex multiscale systems

28 October 2018

1 reference

A life-like virtual cell membrane using discrete automata

21 January 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/20835989

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifying control mechanisms of granuloma formation during M. tuberculosis infection using an agent-based model

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/20835989

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1002/WSBM.45

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:20835989%20AND%20SRC:MED&resulttype=core&format=json

13 February 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:20835989%20AND%20SRC:MED&resulttype=core&format=json

13 February 2020

PubMed publication ID

20835989

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:20835989%20AND%20SRC:MED&resulttype=core&format=json