CpG islands and GC content dictate nucleosome depletion in a transcription-independent manner at mammalian promoters (Q34034120)

30 July 2017

title

CpG islands and GC content dictate nucleosome depletion in a transcription-independent manner at mammalian promoters (English)

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30 July 2017

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Joaquin Zacarias Cabeza

object named as

Joaquin Zacarias Cabeza

series ordinal

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Jean-Christophe Andrau

object named as

Jean-Christophe Andrau

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Salvatore Spicuglia

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Pierre Cauchy

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30 July 2017

Romain Fenouil

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30 July 2017

Marta Gut

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30 July 2017

Nicolas Descostes

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30 July 2017

Charlène Innocenti

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30 July 2017

Frederic Koch

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30 July 2017

Pierre Ferrier

series ordinal

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30 July 2017

Ivo Gut

series ordinal

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30 July 2017

language of work or name

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25 October 2012

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30 July 2017

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30 July 2017

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30 July 2017

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30 July 2017

page(s)

2399-2408

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Genome-wide structure and organization of eukaryotic pre-initiation complexes

30 July 2017

cites work

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3514669

Evolutionary divergence of intrinsic and trans-regulated nucleosome positioning sequences reveals plastic rules for chromatin organization

5 July 2018

1 reference

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Transcription initiation platforms and GTF recruitment at tissue-specific enhancers and promoters.

5 July 2018

1 reference

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The nucleosome map of the mammalian liver

5 July 2018

1 reference

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Determinants of nucleosome organization in primary human cells

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3514669

A Packing Mechanism for Nucleosome Organization Reconstituted Across a Eukaryotic Genome

5 July 2018

1 reference

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GC-rich sequence elements recruit PRC2 in mammalian ES cells

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3514669

Pausing of RNA polymerase II disrupts DNA-specified nucleosome organization to enable precise gene regulation

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3514669

Nucleosome sequence preferences influence in vivo nucleosome organization

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3514669

Contrasting chromatin organization of CpG islands and exons in the human genome

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3514669

CpG islands recruit a histone H3 lysine 36 demethylase

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3514669

CpG islands influence chromatin structure via the CpG-binding protein Cfp1.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3514669

High-resolution nucleosome mapping reveals transcription-dependent promoter packaging

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3514669

RNA polymerase II-TFIIB structure and mechanism of transcription initiation

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3514669

Intrinsic histone-DNA interactions are not the major determinant of nucleosome positions in vivo

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3514669

Divergent transcription: a new feature of active promoters

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3514669

A unifying model for the selective regulation of inducible transcription by CpG islands and nucleosome remodeling

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3514669

G-quadruplex structures: in vivo evidence and function

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3514669

CpG islands--'a rough guide'.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3514669

The DNA-encoded nucleosome organization of a eukaryotic genome

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3514669

Nascent RNA sequencing reveals widespread pausing and divergent initiation at human promoters

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3514669

Divergent transcription from active promoters

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3514669

Genomewide analysis of PRC1 and PRC2 occupancy identifies two classes of bivalent domains

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3514669

Dynamic regulation of nucleosome positioning in the human genome

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3514669

All and only CpG containing sequences are enriched in promoters abundantly bound by RNA polymerase II in multiple tissues

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3514669

Genome-wide maps of chromatin state in pluripotent and lineage-committed cells

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3514669

Mammalian RNA polymerase II core promoters: insights from genome-wide studies

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3514669

Polycomb complexes repress developmental regulators in murine embryonic stem cells

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3514669

Base-stacking and base-pairing contributions into thermal stability of the DNA double helix

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3514669

In vivo degradation of RNA polymerase II largest subunit triggered by alpha-amanitin

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3514669

Research communication copper-1,10-phenanthroline induces internucleosomal DNA fragmentation in HepG2 cells, resulting from direct oxidation by the hydroxyl radical

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3514669

Divergence of CpG island promoters: a consequence or cause of evolution?

5 July 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/23100115

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

A preoccupied position on nucleosomes

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/23100115

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1101/GR.138776.112

1 reference

30 July 2017

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30 July 2017

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