GHOSTX: an improved sequence homology search algorithm using a query suffix array and a database suffix array (Q34010968)

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English	GHOSTX: an improved sequence homology search algorithm using a query suffix array and a database suffix array	scientific article

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scholarly article

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Europe PubMed Central

PubMed publication ID

25099887

retrieved

30 July 2017

title

GHOSTX: an improved sequence homology search algorithm using a query suffix array and a database suffix array (English)

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stated in

Europe PubMed Central

PubMed publication ID

25099887

retrieved

30 July 2017

main subject

database

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author

Takashi Ishida

series ordinal

3

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stated in

Europe PubMed Central

PMC publication ID

4123905

reference URL

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25099887%20AND%20SRC:MED&resulttype=core&format=json

retrieved

1 June 2020

author name string

Shuji Suzuki

series ordinal

1

1 reference

stated in

Europe PubMed Central

PMC publication ID

4123905

reference URL

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25099887%20AND%20SRC:MED&resulttype=core&format=json

retrieved

1 June 2020

Masanori Kakuta

series ordinal

2

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stated in

Europe PubMed Central

PMC publication ID

4123905

reference URL

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25099887%20AND%20SRC:MED&resulttype=core&format=json

retrieved

1 June 2020

Yutaka Akiyama

series ordinal

4

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Europe PubMed Central

PMC publication ID

4123905

reference URL

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25099887%20AND%20SRC:MED&resulttype=core&format=json

retrieved

1 June 2020

language of work or name

English

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publication date

6 August 2014

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Europe PubMed Central

PubMed publication ID

25099887

retrieved

30 July 2017

published in

PLOS One

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stated in

Europe PubMed Central

PMC publication ID

4123905

reference URL

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25099887%20AND%20SRC:MED&resulttype=core&format=json

retrieved

1 June 2020

volume

9

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Europe PubMed Central

PMC publication ID

4123905

reference URL

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25099887%20AND%20SRC:MED&resulttype=core&format=json

retrieved

1 June 2020

issue

8

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Europe PubMed Central

PMC publication ID

4123905

reference URL

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25099887%20AND%20SRC:MED&resulttype=core&format=json

retrieved

1 June 2020

page(s)

e103833

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Europe PubMed Central

PMC publication ID

4123905

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25099887%20AND%20SRC:MED&resulttype=core&format=json

retrieved

1 June 2020

copyright license

Creative Commons Attribution 4.0 International

start time

6 August 2014

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April 2022 Public Data File from Crossref

copyright status

copyrighted

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cites work

Structure, function and diversity of the healthy human microbiome

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4123905

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5 July 2018

KEGG for integration and interpretation of large-scale molecular data sets

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PubMed Central

reference URL

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5 July 2018

RAPSearch2: a fast and memory-efficient protein similarity search tool for next-generation sequencing data

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PubMed Central

reference URL

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5 July 2018

RAPSearch: a fast protein similarity search tool for short reads

1 reference

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PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4123905

retrieved

5 July 2018

Inexact Local Alignment Search over Suffix Arrays

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4123905

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5 July 2018

GPU-BLAST: using graphics processors to accelerate protein sequence alignment

1 reference

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PubMed Central

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5 July 2018

Comparative metagenomics revealed commonly enriched gene sets in human gut microbiomes

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PubMed Central

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5 July 2018

An obesity-associated gut microbiome with increased capacity for energy harvest

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PubMed Central

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5 July 2018

Protein database searches using compositionally adjusted substitution matrices

1 reference

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PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4123905

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5 July 2018

BLAT—The BLAST-Like Alignment Tool

1 reference

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PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4123905

retrieved

5 July 2018

KEGG: kyoto encyclopedia of genes and genomes

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PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4123905

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5 July 2018

Gapped BLAST and PSI-BLAST: a new generation of protein database search programs

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PubMed Central

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5 July 2018

Basic local alignment search tool

1 reference

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PubMed Central

reference URL

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5 July 2018

Searching protein sequence libraries: Comparison of the sensitivity and selectivity of the Smith-Waterman and FASTA algorithms

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PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4123905

retrieved

5 July 2018

Identifiers

DOI

10.1371/JOURNAL.PONE.0103833

1 reference

stated in

Europe PubMed Central

PMC publication ID

4123905

reference URL

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25099887%20AND%20SRC:MED&resulttype=core&format=json

retrieved

1 June 2020

ADS bibcode

2014PLoSO...9j3833S

0 references

PMC publication ID

4123905

1 reference

stated in

Europe PubMed Central

PMC publication ID

4123905

reference URL

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25099887%20AND%20SRC:MED&resulttype=core&format=json

retrieved

1 June 2020

PubMed publication ID

25099887

1 reference

stated in

Europe PubMed Central

PMC publication ID

4123905

reference URL

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25099887%20AND%20SRC:MED&resulttype=core&format=json

retrieved

1 June 2020

ResearchGate publication ID

264644050

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