Phylogenetic inference in Rafflesiales: the influence of rate heterogeneity and horizontal gene transfer (Q21283977)

18 August 2022

Romina Vidal-Russell

Romina

Vidal-Russell

1 reference

18 August 2022

Albert Blarer

Albert

Blarer

1 reference

1049293565

18 August 2022

Yin-Long Qiu

series ordinal

author given names

Yin-Long

author last names

Qiu

1 reference

1049293565

18 August 2022

Frank E Anderson

series ordinal

author given names

Frank E

author last names

Anderson

1 reference

1049293565

full work available at URL

18 August 2022

language of work or name

English

0 references

publication date

20 October 2004

0 references

https://www.academia.edu/787342/Phylogenetic_inference_in_Rafflesiales_the_influence_of_rate_heterogeneity_and_horizontal_gene_transfer?auto=download&email_work_card=download-paper&li=0

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published in

BMC Evolutionary Biology

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Mitochondrial DNA sequences reveal the photosynthetic relatives of Rafflesia, the world's largest flower

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=528834

MrBayes 3: Bayesian phylogenetic inference under mixed models

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=528834

MODELTEST: testing the model of DNA substitution

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=528834

Molecular data place Hydnoraceae with Aristolochiaceae

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=528834

Host-to-parasite gene transfer in flowering plants: phylogenetic evidence from Malpighiales

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=528834

Horizontal gene transfer from flowering plants to Gnetum

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=528834

Bayesian phylogenetic analysis of combined data

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=528834

The earliest angiosperms: evidence from mitochondrial, plastid and nuclear genomes

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=528834

Seq-Gen: an application for the Monte Carlo simulation of DNA sequence evolution along phylogenetic trees

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=528834

Should we be worried about long-branch attraction in real data sets? Investigations using metazoan 18S rDNA.

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=528834

Ancient horizontal gene transfer

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=528834

Potential applications and pitfalls of Bayesian inference of phylogeny

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=528834

Dynamic evolution of plant mitochondrial genomes: mobile genes and introns and highly variable mutation rates

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=528834

Explosive invasion of plant mitochondria by a group I intron

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=528834

Genomic evidence for two functionally distinct gene classes.

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=528834

Evolution of the mitochondrial cytochrome oxidase II gene in collembola

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=528834

High rates of nucleotide substitution in nuclear small-subunit (18S) rDNA from holoparasitic flowering plants

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=528834

From field to film: rapid sequencing methods for field-collected plant species

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=528834

Was the ANITA rooting of the angiosperm phylogeny affected by long-branch attraction? Amborella, Nymphaeales, Illiciales, Trimeniaceae, and Austrobaileya

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=528834

Inferring complex phylogenies.

30 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=528834

Fungal origin by horizontal transfer of a plant mitochondrial group I intron in the chimeric CoxI gene of Peperomia

30 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=528834

Widespread horizontal transfer of mitochondrial genes in flowering plants

30 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=528834

Is it better to add taxa or characters to a difficult phylogenetic problem?

29 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=528834

Mosses share mitochondrial group II introns with flowering plants, not with liverworts

29 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=528834

The mitochondrial nad2 gene as a novel marker locus for phylogenetic analysis of early land plants: a comparative analysis in mosses

29 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=528834

Multigene analyses identify the three earliest lineages of extant flowering plants.

29 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=528834

Characterization of mitochondrial small-subunit ribosomal RNAs from holoparasitic plants

29 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=528834

Structural analyses of plastid-derived 16S rRNAs in holoparasitic angiosperms

29 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=528834

Do nonasterid holoparasitic flowering plants have plastid genomes?

29 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=528834

Promiscuous mitochondrial group II intron sequences in plant nuclear genomes.

29 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=528834

Rings of single-walled carbon nanotubes

29 November 2018

1 reference

12 December 2020

The phylogeny of land plants inferred from 18S rDNA sequences: pushing the limits of rDNA signal?

1 reference

12 December 2020

Extensive intraindividual variation in plastid rDNA sequences from the holoparasite Cynomorium coccineum (Cynomoriaceae)

1 reference

12 December 2020

Confidence Limits on Phylogenies: an Approach using the Bootstrap

1 reference

12 December 2020

Identifiers

DOI

10.1186/1471-2148-4-40

1 reference

https://scigraph.springernature.com/pub.10.1186/1471-2148-4-40

1 reference

9 September 2019

1 reference

1 reference

PubMed publication ID

15496229

1 reference