Abundance and functional diversity of riboswitches in microbial communities (Q21266557)

Dimensions

18 August 2022

Mikhail S

Gelfand

Mikhail S Gelfand

1 reference

Dimensions

18 August 2022

Alexey G Vitreschak

Alexey G

Vitreschak

1 reference

Dimensions

1045038253

The Sorcerer II Global Ocean Sampling expedition: northwest Atlantic through eastern tropical Pacific

18 August 2022

language of work or name

English

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publication date

2007

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347

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cites work

1 reference

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The Sorcerer II Global Ocean Sampling expedition: expanding the universe of protein families

19 March 2017

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19 March 2017

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Evidence for a second class of S-adenosylmethionine riboswitches and other regulatory RNA motifs in alpha-proteobacteria

19 March 2017

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The microbial selenoproteome of the Sargasso Sea

19 March 2017

1 reference

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New RNA motifs suggest an expanded scope for riboswitches in bacterial genetic control

19 March 2017

1 reference

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Regulation of lysine biosynthesis and transport genes in bacteria: yet another RNA riboswitch?

19 March 2017

1 reference

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An mRNA structure in bacteria that controls gene expression by binding lysine

19 March 2017

1 reference

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The L box regulon: Lysine sensing by leader RNAs of bacterial lysine biosynthesis genes

19 March 2017

1 reference

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Regulation of the vitamin B12 metabolism and transport in bacteria by a conserved RNA structural element

19 March 2017

1 reference

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Metabolite-binding RNA domains are present in the genes of eukaryotes

19 March 2017

1 reference

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The riboswitch-mediated control of sulfur metabolism in bacteria

19 March 2017

1 reference

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An mRNA structure that controls gene expression by binding FMN

19 March 2017

1 reference

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Regulation of riboflavin biosynthesis and transport genes in bacteria by transcriptional and translational attenuation

19 March 2017

1 reference

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Exploring prokaryotic diversity in the genomic era

19 March 2017

1 reference

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Adenosylcobalamin inhibits ribosome binding to btuB RNA

19 March 2017

1 reference

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Xanthine metabolism in Bacillus subtilis: characterization of the xpt-pbuX operon and evidence for purine- and nitrogen-controlled expression of genes involved in xanthine salvage and catabolism

19 March 2017

1 reference

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The Uncultured Microbial Majority

19 March 2017

1 reference

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Basic local alignment search tool

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2211319

Environmental genome shotgun sequencing of the Sargasso Sea

19 March 2017

1 reference

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A Genomic Perspective on Protein Families

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2211319

A riboswitch selective for the queuosine precursor preQ1 contains an unusually small aptamer domain

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2211319

The S(MK) box is a new SAM-binding RNA for translational regulation of SAM synthetase

19 March 2017

1 reference

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Structural basis for discriminative regulation of gene expression by adenine- and guanine-sensing mRNAs

19 March 2017

1 reference

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Structure of a natural guanine-responsive riboswitch complexed with the metabolite hypoxanthine

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2211319

A glycine-dependent riboswitch that uses cooperative binding to control gene expression

19 March 2017

1 reference

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Advanced sequencing technologies: methods and goals

19 March 2017

1 reference

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Control of gene expression by a natural metabolite-responsive ribozyme

19 March 2017

1 reference

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Adenine riboswitches and gene activation by disruption of a transcription terminator

19 March 2017

1 reference

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Thiamine-regulated gene expression of Aspergillus oryzae thiA requires splicing of the intron containing a riboswitch-like domain in the 5'-UTR

19 March 2017

1 reference

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A functional link between RuBisCO-like protein of Bacillus and photosynthetic RuBisCO

19 March 2017

1 reference

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An mRNA structure that controls gene expression by binding S-adenosylmethionine

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2211319

Riboswitches control fundamental biochemical pathways in Bacillus subtilis and other bacteria

19 March 2017

1 reference

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Sensing small molecules by nascent RNA: a mechanism to control transcription in bacteria

19 March 2017

1 reference

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Thiamine derivatives bind messenger RNAs directly to regulate bacterial gene expression

19 March 2017

1 reference

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Comparative genomics of thiamin biosynthesis in procaryotes. New genes and regulatory mechanisms

19 March 2017

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Genetic control by a metabolite binding mRNA

19 March 2017

1 reference

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A conserved RNA structure element involved in the regulation of bacterial riboflavin synthesis genes

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2211319

The S box regulon: a new global transcription termination control system for methionine and cysteine biosynthesis genes in gram-positive bacteria

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2211319

Comparative metagenomics of microbial communities

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2211319

Gene regulation by riboswitches

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2211319

Metagenomics: DNA sequencing of environmental samples.

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2211319

Metagenomic marine nitrogen fixation--feast or famine?

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2211319

Microbial community genomics in the ocean

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2211319

Regulation of gene expression by effectors that bind to RNA.

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2211319

Riboswitches: the oldest mechanism for the regulation of gene expression?

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2211319

Transcription termination control of the S box system: direct measurement of S-adenosylmethionine by the leader RNA.

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2211319

Sensing Small Molecules by Nascent RNA

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2211319

Expression of thiamin biosynthetic genes (thiCOGE) and production of symbiotic terminal oxidase cbb3 in Rhizobium etli

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2211319

Genetic diversity in Sargasso Sea bacterioplankton

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2211319

Transcribed sequences of the Escherichia coli btuB gene control its expression and regulation by vitamin B12

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2211319

Comparative genomics of the methionine metabolism in Gram-positive bacteria: a variety of regulatory systems.

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2211319

TEXshade: shading and labeling of multiple sequence alignments using LATEX2 epsilon.

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2211319

Vitamin B12 repression of the btuB gene in Salmonella typhimurium is mediated via a translational control which requires leader and coding sequences

29 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2211319

Lysine-induced premature transcription termination in the lysC operon of Bacillus subtilis

29 November 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/17908319

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

The leader sequence of the Escherichia coli lysC gene is involved in the regulation of LysC synthesis

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/17908319

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1186/1471-2164-8-347

0 references