Inferring the relation between transcriptional and posttranscriptional regulation from expression compendia (Q28658016)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24467879%20AND%20SRC:MED&resulttype=core&format=json

6 March 2020

title

Inferring the relation between transcriptional and posttranscriptional regulation from expression compendia (English)

1 reference

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6 March 2020

1 reference

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6 March 2020

Ivan Ishchukov

1 reference

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6 March 2020

Yan Wu

series ordinal

1 reference

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6 March 2020

Sandra Van Puyvelde

series ordinal

1 reference

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6 March 2020

Jos Vanderleyden

series ordinal

1 reference

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6 March 2020

language of work or name

English

0 references

publication date

27 January 2014

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6 March 2020

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6 March 2020

volume

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6 March 2020

0 references

1 reference

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Small RNA-mediated activation of sugar phosphatase mRNA regulates glucose homeostasis

6 March 2020

cites work

1 reference

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Post-transcriptional control of the Escherichia coli PhoQ-PhoP two-component system by multiple sRNAs involves a novel pairing region of GcvB

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17 March 2017

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17 March 2017

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17 March 2017

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17 March 2017

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Structure of L-Xylulose-5-Phosphate 3-Epimerase (UlaE) from the Anaerobic L-Ascorbate Utilization Pathway of Escherichia coli: Identification of a Novel Phosphate Binding Motif within a TIM Barrel Fold

17 March 2017

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SigmaE-dependent small RNAs of Salmonella respond to membrane stress by accelerating global omp mRNA decay

17 March 2017

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Large-scale mapping and validation of Escherichia coli transcriptional regulation from a compendium of expression profiles

17 March 2017

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Target prediction for small, noncoding RNAs in bacteria

17 March 2017

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Effect of RyhB small RNA on global iron use in Escherichia coli

17 March 2017

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GadY, a small-RNA regulator of acid response genes in Escherichia coli

17 March 2017

1 reference

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A small RNA regulates the expression of genes involved in iron metabolism in Escherichia coli

17 March 2017

1 reference

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Computational identification of noncoding RNAs in E. coli by comparative genomics

17 March 2017

1 reference

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BiNGO: a Cytoscape plugin to assess overrepresentation of gene ontology categories in biological networks

17 March 2017

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Cellular defenses against superoxide and hydrogen peroxide

7 April 2017

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7 April 2017

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The transcriptional landscape and small RNAs of Salmonella enterica serovar Typhimurium.

3 June 2018

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Multiple factors dictate target selection by Hfq-binding small RNAs

3 June 2018

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SoxS increases the expression of the zinc uptake system ZnuACB in an Escherichia coli murine pyelonephritis model.

3 June 2018

1 reference

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Bacterial adaptation of respiration from oxic to microoxic and anoxic conditions: redox control

3 June 2018

1 reference

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Functional characterization of bacterial sRNAs using a network biology approach

3 June 2018

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Deep sequencing reveals as-yet-undiscovered small RNAs in Escherichia coli

3 June 2018

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Discriminating tastes: physiological contributions of the Hfq-binding small RNA Spot 42 to catabolite repression

3 June 2018

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Genome-wide detection of novel regulatory RNAs in E. coli

3 June 2018

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Biosynthesis of complex iron-sulfur enzymes

3 June 2018

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RNase III participates in GadY-dependent cleavage of the gadX-gadW mRNA.

3 June 2018

1 reference

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An In Vivo Method for Characterization of Protein Interactions within Sulfur Trafficking Systems of E. coli

3 June 2018

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Advantages and limitations of current network inference methods

3 June 2018

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Activation of gene expression by small RNA.

3 June 2018

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Comparative analysis of module-based versus direct methods for reverse-engineering transcriptional regulatory networks

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3948049

IscR controls iron-dependent biofilm formation in Escherichia coli by regulating type I fimbria expression

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3948049

Computational approaches to study transcriptional regulation

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3948049

TargetRNA: a tool for predicting targets of small RNA action in bacteria

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3948049

Validating module network learning algorithms using simulated data

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3948049

Prediction of small, noncoding RNAs in bacteria using heterogeneous data

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3948049

Oxygen limitation modulates pH regulation of catabolism and hydrogenases, multidrug transporters, and envelope composition in Escherichia coli K-12.

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3948049

Genetic regulation of fluxes: iron homeostasis of Escherichia coli

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3948049

A design for life: prokaryotic metal-binding MerR family regulators.

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3948049

NapGH components of the periplasmic nitrate reductase of Escherichia coli K-12: location, topology and physiological roles in quinol oxidation and redox balancing

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3948049

SoxRS-Regulated Expression and Genetic Analysis of theyggXGene ofEscherichia coli

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3948049

Iterative signature algorithm for the analysis of large-scale gene expression data

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3948049

Purine catabolism in Escherichia coli and function of xanthine dehydrogenase in purine salvage

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3948049

Annotating eukaryote genomes

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3948049

Cloning and analysis of the shiA gene, which encodes the shikimate transport system of escherichia coli K-12.

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3948049

A small, stable RNA induced by oxidative stress: role as a pleiotropic regulator and antimutator

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3948049

Nitrate reduction to ammonia by enteric bacteria: redundancy, or a strategy for survival during oxygen starvation?

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3948049

Molecular characterization of adiY, a regulatory gene which affects expression of the biodegradative acid-induced arginine decarboxylase gene (adiA) of Escherichia coli

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3948049

Autoregulation of iclR, the gene encoding the repressor of the glyoxylate bypass operon

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3948049

Genetic and functional analysis of the multiple antibiotic resistance (mar) locus in Escherichia coli

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3948049

Mu d-directed lacZ fusions regulated by low pH in Escherichia coli

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3948049

pH dependence and gene structure of inaA in Escherichia coli

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3948049

Genetic analysis of the isc operon in Escherichia coli involved in the biogenesis of cellular iron-sulfur proteins.

3 June 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2180-14-14

A third bacterial system for the assembly of iron-sulfur clusters with homologs in archaea and plastids.

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2180-14-14

SufE transfers sulfur from SufS to SufB for iron-sulfur cluster assembly.

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2180-14-14

The SufE protein and the SufBCD complex enhance SufS cysteine desulfurase activity as part of a sulfur transfer pathway for Fe-S cluster assembly in Escherichia coli.

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2180-14-14

Escherichia coli transcription factor YncC (McbR) regulates colanic acid and biofilm formation by repressing expression of periplasmic protein YbiM (McbA).

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2180-14-14

Transcriptional response of Escherichia coli to external copper.

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2180-14-14

Kinetic modeling of ace operon genetic regulation in Escherichia coli.

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2180-14-14

Effect of the local anesthetics phenethyl alcohol and procaine on hns mutants of the acid-induced biodegradative arginine (adi) and lysine (cad) decarboxylases of Escherichia coli

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2180-14-14

Pervasive post-transcriptional control of genes involved in amino acid metabolism by the Hfq-dependent GcvB small RNA.

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2180-14-14

GadX/GadW-dependent regulation of the Escherichia coli acid fitness island: transcriptional control at the gadY-gadW divergent promoters and identification of four novel 42 bp GadX/GadW-specific binding sites

21 January 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3948049

Revealing modular organization in the yeast transcriptional network.

27 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3948049

Prokaryotic transcriptomics: a new view on regulation, physiology and pathogenicity

27 November 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/24467879

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1186/1471-2180-14-14

2 references

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24467879%20AND%20SRC:MED&resulttype=core&format=json

Dimensions Publication ID

6 March 2020

1012166070

0 references

1 reference

2 references

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24467879%20AND%20SRC:MED&resulttype=core&format=json

6 March 2020

PubMed publication ID

24467879

2 references

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24467879%20AND%20SRC:MED&resulttype=core&format=json