A revised time tree of the asterids: establishing a temporal framework for evolutionary studies of the coffee family (rubiaceae) (Q28637314)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25996595%20AND%20SRC:MED&resulttype=core&format=json

12 June 2020

Birgitta Bremer

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25996595%20AND%20SRC:MED&resulttype=core&format=json

12 June 2020

Jenny E E Smedmark

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25996595%20AND%20SRC:MED&resulttype=core&format=json

Sylvain G. Razafimandimbison

12 June 2020

series ordinal

object named as

Sylvain G Razafimandimbison

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25996595%20AND%20SRC:MED&resulttype=core&format=json

12 June 2020

Niklas Wikström

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25996595%20AND%20SRC:MED&resulttype=core&format=json

12 June 2020

language of work or name

English

0 references

publication date

2015

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published in

PLOS One

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12 June 2020

volume

1 reference

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12 June 2020

issue

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25996595%20AND%20SRC:MED&resulttype=core&format=json

12 June 2020

page(s)

e0126690

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25996595%20AND%20SRC:MED&resulttype=core&format=json

Creative Commons Attribution 4.0 International

12 June 2020

start time

21 May 2015

1 reference

April 2022 Public Data File from Crossref

copyrighted

0 references

cites work

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A total-evidence approach to dating with fossils, applied to the early radiation of the hymenoptera

17 March 2017

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Bayesian phylogenetics with BEAUti and the BEAST 1.7

17 March 2017

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An extinct Eocene taxon of the daisy family (Asteraceae): evolutionary, ecological and biogeographical implications

17 March 2017

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Best practices for justifying fossil calibrations

17 March 2017

1 reference

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Establishing a time-scale for plant evolution

17 March 2017

1 reference

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Angiosperm diversification through time

17 March 2017

1 reference

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New algorithms and methods to estimate maximum-likelihood phylogenies: assessing the performance of PhyML 3.0

17 March 2017

1 reference

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Tracing the impact of the Andean uplift on Neotropical plant evolution

17 March 2017

1 reference

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Inferring phylogenies with incomplete data sets: a 5-gene, 567-taxon analysis of angiosperms

17 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4462594

Rosid radiation and the rapid rise of angiosperm-dominated forests

17 March 2017

1 reference

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Using plastid genome-scale data to resolve enigmatic relationships among basal angiosperms

17 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4462594

Paleontological evidence to date the tree of life

17 March 2017

1 reference

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Relaxed phylogenetics and dating with confidence

17 March 2017

1 reference

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MUSCLE: multiple sequence alignment with high accuracy and high throughput

17 March 2017

1 reference

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Darwin's abominable mystery: Insights from a supertree of the angiosperms

17 March 2017

1 reference

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MrBayes 3: Bayesian phylogenetic inference under mixed models

17 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4462594

Phylogenetics of asterids based on 3 coding and 3 non-coding chloroplast DNA markers and the utility of non-coding DNA at higher taxonomic levels

17 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4462594

Evolution of the angiosperms: calibrating the family tree

17 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4462594

Estimation of primate speciation dates using local molecular clocks

17 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4462594

A compound poisson process for relaxing the molecular clock

17 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4462594

Search and clustering orders of magnitude faster than BLAST

17 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4462594

Accounting for calibration uncertainty in phylogenetic estimation of evolutionary divergence times

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4462594

Bayesian phylogenetic analysis of combined data

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4462594

r8s: inferring absolute rates of molecular evolution and divergence times in the absence of a molecular clock

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4462594

Estimating absolute rates of molecular evolution and divergence times: a penalized likelihood approach

7 April 2017

2 references

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4462594

7 April 2017

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0126690

Estimating the rate of evolution of the rate of molecular evolution

21 January 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4462594

SEAVIEW and PHYLO_WIN: two graphic tools for sequence alignment and molecular phylogeny

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4462594

Universal primers for amplification of three non-coding regions of chloroplast DNA

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4462594

Chloroplast DNA phylogeny, reticulate evolution, and biogeography of Paeonia (Paeoniaceae)

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4462594

Performance of a divergence time estimation method under a probabilistic model of rate evolution

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4462594

The age and diversification of the angiosperms re-revisited

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4462594

Rates of molecular evolution are linked to life history in flowering plants

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4462594

A general comparison of relaxed molecular clock models

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4462594

Rocks and clocks: calibrating the Tree of Life using fossils and molecules

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4462594

Phylogeny and generic limits in the sister tribes Psychotrieae and Palicoureeae (Rubiaceae): Evolution of schizocarps in Psychotria and origins of bacterial leaf nodules of the Malagasy species

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4462594

New Caledonian lineages of Psychotria (Rubiaceae) reveal different evolutionary histories and the largest documented plant radiation for the archipelago.

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4462594

Inferring geographic range evolution of a pantropical tribe in the coffee family (Lasiantheae, Rubiaceae) in the face of topological uncertainty.

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4462594

Evolution of growth habit, inflorescence architecture, flower size, and fruit type in Rubiaceae: its ecological and evolutionary implications

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4462594

Model averaging and Bayes factor calculation of relaxed molecular clocks in Bayesian phylogenetics

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4462594

Tylerianthus crossmanensis gen. et sp. nov. (aff. Hydrangeaceae) from the Upper Cretaceous of New Jersey.

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4462594

Pentapetalum trifasciculandricus gen. et sp. nov., a thealean fossil flower from the Raritan Formation, New Jersey, USA (Turonian, Late Cretaceous).

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4462594

Angiosperm phylogeny: 17 genes, 640 taxa

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4462594

Relaxed molecular clocks, the bias-variance trade-off, and the quality of phylogenetic inference

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4462594

An examination of phylogenetic models of substitution rate variation among lineages

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4462594

Origin and early evolution of angiosperms

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4462594

Rare and enigmatic genera (Dunnia, Schizocolea, Colletoecema), sisters to species-rich clades: phylogeny and aspects of conservation biology in the coffee family.

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4462594

Angiosperm divergence times: the effect of genes, codon positions, and time constraints

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4462594

The age of the angiosperms: a molecular timescale without a clock

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4462594

Bayesian models of episodic evolution support a late precambrian explosive diversification of the Metazoa

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4462594

A comparative study of metal levels in leaves of some Al-accumulating Rubiaceae

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4462594

Low host specificity of herbivorous insects in a tropical forest

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4462594

Rate heterogeneity among lineages of tracheophytes: integration of molecular and fossil data and evidence for molecular living fossils

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4462594

The Staden sequence analysis package

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4462594

A Global Assessment of Distribution, Diversity, Endemism, and Taxonomic Effort in the Rubiaceae1

3 June 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0126690

A Review of Molecular Phylogenetic Studies of Rubiaceae1

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0126690

Re-assessment of monophyly, evolution of myrmecophytism, and rapid radiation in Neonauclea s.s. (Rubiaceae).

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0126690

Molecular systematics and morphological character evolution of the Condamineeae (Rubiaceae)

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0126690

Divergence time uncertainty and historical biogeography reconstruction - an example from Urophylleae (Rubiaceae)

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0126690

Historical biogeography of the coffee family (Rubiaceae, Gentianales) in Madagascar: case studies from the tribes Knoxieae, Naucleeae, Paederieae and Vanguerieae

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0126690

Time Tree of Rubiaceae: Phylogeny and Dating the Family, Subfamilies, and Tribes

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0126690

Molecular phylogenetic dating of asterid flowering plants shows early Cretaceous diversification

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0126690

Phylogenetic relationships and new tribal delimitations in subfamily Ixoroideae (Rubiaceae)

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0126690

Deep divergences in the coffee family and the systematic position of Acranthera

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0126690

Phylogenetic structure and clade circumscriptions in the Gardenieae complex (Rubiaceae)

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0126690

Chloroplast rps16 intron phylogeny of the tribe Sileneae (Caryophyllaceae)

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0126690

Phylogeny of the Tribe Cinchoneae (Rubiaceae), Its Position in Cinchonoideae, and Description of a New Genus, Ciliosemina

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0126690

Phylogeny of Euclinia and allied genera of Gardenieae (Rubiaceae), and description of Melanoxerus, an endemic genus of Madagascar

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0126690

Fossil evidence and phylogeny: the age of major angiosperm clades based on mesofossil and macrofossil evidence from Cretaceous deposits

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0126690

Fossil Record of the Rubiaceae

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0126690

Eocene plant diversity at Laguna del Hunco and Río Pichileufú, Patagonia, Argentina

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0126690

Cretaceous angiosperm flowers: Innovation and evolution in plant reproduction

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0126690

The phylogeny of the Asteridae sensu lato based on chloroplast ndhF gene sequences

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0126690

A 567‐Taxon Data Set for Angiosperms: The Challenges Posed by Bayesian Analyses of Large Data Sets

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0126690

21 January 2018

Phylogeny of Lamiidae

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0126690

A Nonparametric Approach to Estimating Divergence Times in the Absence of Rate Constancy

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0126690

Evaluation of Bayesian Models of Substitution Rate Evolution—Parental Guidance versus Mutual Independence

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0126690

Evolution of fruit characters and dispersal modes in the tropical family Rubiaceae

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0126690

Effects of Models of Rate Evolution on Estimation of Divergence Dates with Special Reference to the Metazoan 18S Ribosomal RNA Phylogeny

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0126690

Markov Chasin Monte Carlo Algorithms for the Bayesian Analysis of Phylogenetic Trees

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0126690

Reconstructing ancestral patterns of colonization and dispersal in the Hawaiian understory tree genus Psychotria (Rubiaceae): a comparison of parsimony and likelihood approaches

21 January 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4462594

Pollen morphology of NW European representatives confirms monophyly of Rubieae (Rubiaceae)

27 November 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0126690

More characters or more taxa for a robust phylogeny--case study from the coffee family (Rubiaceae)

21 January 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/25996595

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1371/JOURNAL.PONE.0126690

2 references

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25996595%20AND%20SRC:MED&resulttype=core&format=json

12 June 2020

ADS bibcode

2015PLoSO..1026690W

0 references

1 reference

2 references

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25996595%20AND%20SRC:MED&resulttype=core&format=json

12 June 2020

PubMed publication ID

25996595

2 references

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25996595%20AND%20SRC:MED&resulttype=core&format=json