Bottlenecks in HIV-1 transmission: insights from the study of founder viruses (Q28082862)

main subject

pathogen transmission

0 references

0 references

Myron S. Cohen

1 reference

Ronald Swanstrom

1 reference

Angela D. M. Kashuba

1 reference

Sarah B. Joseph

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language of work or name

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July 2015

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Nature Reviews Microbiology

published in

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414-25

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Vaginal challenge with an SIV-based dual reporter system reveals that infection can occur throughout the upper and lower female reproductive tract

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Semen-derived amyloid fibrils drastically enhance HIV infection

20 March 2017

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Genetic characterization of human immunodeficiency virus type 1 in blood and genital secretions: evidence for viral compartmentalization and selection during sexual transmission

20 March 2017

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7 April 2017

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Chemokine receptors as HIV-1 coreceptors: roles in viral entry, tropism, and disease

7 April 2017

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7 April 2017

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Identification and characterization of transmitted and early founder virus envelopes in primary HIV-1 infection

7 April 2017

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Male circumcision for HIV prevention in men in Rakai, Uganda: a randomised trial

7 April 2017

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7 April 2017

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Targeting α4β7 integrin reduces mucosal transmission of simian immunodeficiency virus and protects gut-associated lymphoid tissue from infection

7 April 2017

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Advances in HIV prevention for serodiscordant couples

29 September 2017

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Type I interferon responses in rhesus macaques prevent SIV infection and slow disease progression

29 September 2017

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HIV transmission. Selection bias at the heterosexual HIV-1 transmission bottleneck

29 September 2017

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Antiviral lectins as potential HIV microbicides

29 September 2017

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The lectin pathway of complement: advantage or disadvantage in HIV pathogenesis?

29 September 2017

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Molecularly tagged simian immunodeficiency virus SIVmac239 synthetic swarm for tracking independent infection events

29 September 2017

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The contribution of viral genotype to plasma viral set-point in HIV infection

29 September 2017

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Vaginal myeloid dendritic cells transmit founder HIV-1.

29 September 2017

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Virulence and pathogenesis of HIV-1 infection: an evolutionary perspective

29 September 2017

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Immunological and virological mechanisms of vaccine-mediated protection against SIV and HIV.

29 September 2017

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Effect of semen and seminal amyloid on vaginal transmission of simian immunodeficiency virus

29 September 2017

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Quantification of entry phenotypes of macrophage-tropic HIV-1 across a wide range of CD4 densities

29 September 2017

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HIV migration between blood and cerebrospinal fluid or semen over time

29 September 2017

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Relative resistance of HIV-1 founder viruses to control by interferon-alpha

29 September 2017

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Viral RNA levels and env variants in semen and tissues of mature male rhesus macaques infected with SIV by penile inoculation

29 September 2017

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Genital herpes simplex virus type 2 infection in humanized HIV-transgenic mice triggers HIV shedding and is associated with greater neurological disease

29 September 2017

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Neisseria gonorrhoeae-derived heptose elicits an innate immune response and drives HIV-1 expression

29 September 2017

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Comparison of viral Env proteins from acute and chronic infections with subtype C human immunodeficiency virus type 1 identifies differences in glycosylation and CCR5 utilization and suggests a new strategy for immunogen design

29 September 2017

1 reference

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Phenotypic properties of transmitted founder HIV-1

29 September 2017

1 reference

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Frequent and variable cytotoxic-T-lymphocyte escape-associated fitness costs in the human immunodeficiency virus type 1 subtype B Gag proteins

29 September 2017

1 reference

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Human immunodeficiency viruses appear compartmentalized to the female genital tract in cross-sectional analyses but genital lineages do not persist over time

29 September 2017

1 reference

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Central nervous system compartmentalization of HIV-1 subtype C variants early and late in infection in young children

29 September 2017

1 reference

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Transmitted/founder and chronic HIV-1 envelope proteins are distinguished by differential utilization of CCR5.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4793885

Sexual transmission of predicted CXCR4-tropic HIV-1 likely originating from the source partner's seminal cells.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4793885

Increased HIV-1 vaccine efficacy against viruses with genetic signatures in Env V2

29 September 2017

1 reference

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Transmitted/founder and chronic subtype C HIV-1 use CD4 and CCR5 receptors with equal efficiency and are not inhibited by blocking the integrin α4β7

29 September 2017

1 reference

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Whole genome deep sequencing of HIV-1 reveals the impact of early minor variants upon immune recognition during acute infection

29 September 2017

1 reference

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Generation of transmitted/founder HIV-1 infectious molecular clones and characterization of their replication capacity in CD4 T lymphocytes and monocyte-derived macrophages

29 September 2017

1 reference

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Genital tract inflammation during early HIV-1 infection predicts higher plasma viral load set point in women

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4793885

Peptides released by physiological cleavage of semen coagulum proteins form amyloids that enhance HIV infection

29 September 2017

1 reference

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High-mannose glycan-dependent epitopes are frequently targeted in broad neutralizing antibody responses during human immunodeficiency virus type 1 infection

29 September 2017

1 reference

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Role of donor genital tract HIV-1 diversity in the transmission bottleneck

29 September 2017

1 reference

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Recurrent signature patterns in HIV-1 B clade envelope glycoproteins associated with either early or chronic infections

29 September 2017

1 reference

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A signature in HIV-1 envelope leader peptide associated with transition from acute to chronic infection impacts envelope processing and infectivity

29 September 2017

1 reference

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Phenotypic and immunologic comparison of clade B transmitted/founder and chronic HIV-1 envelope glycoproteins

29 September 2017

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The genetic bottleneck in vertical transmission of subtype C HIV-1 is not driven by selection of especially neutralization-resistant virus from the maternal viral population

29 September 2017

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Genital HIV-1 RNA predicts risk of heterosexual HIV-1 transmission

29 September 2017

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The Genotype of Early-Transmitting HIV gp120s Promotes α4β7 –Reactivity, Revealing α4β7+/CD4+ T cells As Key Targets in Mucosal Transmission

29 September 2017

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Genetic impact of vaccination on breakthrough HIV-1 sequences from the STEP trial

29 September 2017

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HIV-1 envelope subregion length variation during disease progression

29 September 2017

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HIV-1 Populations in Semen Arise through Multiple Mechanisms

29 September 2017

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Transmission of single HIV-1 genomes and dynamics of early immune escape revealed by ultra-deep sequencing

29 September 2017

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Semen-mediated enhancement of HIV infection is donor-dependent and correlates with the levels of SEVI.

29 September 2017

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High Multiplicity Infection by HIV-1 in Men Who Have Sex with Men.

29 September 2017

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The origins of sexually transmitted HIV among men who have sex with men.

29 September 2017

1 reference

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Estimation of the initial viral growth rate and basic reproductive number during acute HIV-1 infection

29 September 2017

1 reference

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Compartmentalization of HIV-1 within the female genital tract is due to monotypic and low-diversity variants not distinct viral populations

29 September 2017

1 reference

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A quantitative affinity-profiling system that reveals distinct CD4/CCR5 usage patterns among human immunodeficiency virus type 1 and simian immunodeficiency virus strains

29 September 2017

1 reference

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Mannose-binding lectin is present in human semen and modulates cellular adhesion of Neisseria gonorrhoeae in vitro.

29 September 2017

1 reference

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Heterosexual transmission of human immunodeficiency virus type 1 subtype C: Macrophage tropism, alternative coreceptor use, and the molecular anatomy of CCR5 utilization.

29 September 2017

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Genetic identity, biological phenotype, and evolutionary pathways of transmitted/founder viruses in acute and early HIV-1 infection

29 September 2017

1 reference

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Monotypic human immunodeficiency virus type 1 genotypes across the uterine cervix and in blood suggest proliferation of cells with provirus

29 September 2017

1 reference

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Glycerol monolaurate prevents mucosal SIV transmission

29 September 2017

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Quantitating the multiplicity of infection with human immunodeficiency virus type 1 subtype C reveals a non-poisson distribution of transmitted variants

29 September 2017

1 reference

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Inflammatory genital infections mitigate a severe genetic bottleneck in heterosexual transmission of subtype A and C HIV-1

29 September 2017

1 reference

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Selection of HIV variants with signature genotypic characteristics during heterosexual transmission

29 September 2017

1 reference

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Maraviroc for previously treated patients with R5 HIV-1 infection

29 September 2017

1 reference

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Behavioural strategies to reduce HIV transmission: how to make them work better

29 September 2017

1 reference

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Herpes simplex virus 2 serostatus and viral loads of HIV-1 in blood and semen as risk factors for HIV transmission among men who have sex with men.

29 September 2017

1 reference

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Bacterial vaginosis and HIV acquisition: a meta-analysis of published studies

29 September 2017

1 reference

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Variation in HIV-1 set-point viral load: epidemiological analysis and an evolutionary hypothesis

29 September 2017

1 reference

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The interaction of HIV with dendritic cells: outcomes and pathways

29 September 2017

1 reference

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Escape from the dominant HLA-B27-restricted cytotoxic T-lymphocyte response in Gag is associated with a dramatic reduction in human immunodeficiency virus type 1 replication

29 September 2017

1 reference

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Targeting the glycans of glycoproteins: a novel paradigm for antiviral therapy

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4793885

Rapid reversion of sequence polymorphisms dominates early human immunodeficiency virus type 1 evolution

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4793885

Human immunodeficiency virus type 1 V1-V2 envelope loop sequences expand and add glycosylation sites over the course of infection, and these modifications affect antibody neutralization sensitivity

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4793885

Fitness cost of escape mutations in p24 Gag in association with control of human immunodeficiency virus type 1

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4793885

Herpes simplex virus 2 infection increases HIV acquisition in men and women: systematic review and meta-analysis of longitudinal studies.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4793885

Temporal and anatomic relationship between virus replication and cytokine gene expression after vaginal simian immunodeficiency virus infection.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4793885

Selection for human immunodeficiency virus type 1 envelope glycosylation variants with shorter V1-V2 loop sequences occurs during transmission of certain genetic subtypes and may impact viral RNA levels

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4793885

Characterization of human immunodeficiency virus type 1 (HIV-1) envelope variation and neutralizing antibody responses during transmission of HIV-1 subtype B.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4793885

Roles of substrate availability and infection of resting and activated CD4+ T cells in transmission and acute simian immunodeficiency virus infection

29 September 2017

1 reference

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R5 HIV productively infects Langerhans cells, and infection levels are regulated by compound CCR5 polymorphisms

29 September 2017

1 reference

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Decrease in human immunodeficiency virus type 1 load during acute dengue fever

29 September 2017

1 reference

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Candidate microbicides block HIV-1 infection of human immature Langerhans cells within epithelial tissue explants

29 September 2017

1 reference

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Analysis of human immunodeficiency virus in semen: indications of a genetically distinct virus reservoir

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4793885

Evolution of envelope sequences from the genital tract and peripheral blood of women infected with clade A human immunodeficiency virus type 1.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4793885

Human immunodeficiency virus in semen arises from a genetically distinct virus reservoir

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4793885

The Unenlarged Lymph Nodes of HIV-1–infected, Asymptomatic Patients with High CD4 T Cell Counts Are Sites for Virus Replication and CD4 T Cell Proliferation. The Impact of Highly Active Antiretroviral Therapy

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4793885

Human Immunodeficiency Virus Type 1 Populations in Blood and Semen

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4793885

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4793885

Genital mucosal transmission of simian immunodeficiency virus: animal model for heterosexual transmission of human immunodeficiency virus

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4793885

Envelope glycoprotein binding to the integrin α4β7 is not a general property of most HIV-1 strains

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4793885

Characterization of mannose-binding lectin (MBL) variants by allele-specific sequencing of MBL2 and determination of serum MBL protein levels

2 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4793885

Comment on "The origins of sexually transmitted HIV among men who have sex with men".

2 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4793885

Compartmentalization and clonal amplification of HIV-1 variants in the cerebrospinal fluid during primary infection

2 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4793885

Dendritic cells exposed to human immunodeficiency virus type-1 transmit a vigorous cytopathic infection to CD4+ T cells

2 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4793885

Infection of macaques after vaginal exposure to cell-associated simian immunodeficiency virus

2 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4793885

Male genital tract compartmentalization of human immunodeficiency virus type 1 (HIV).

27 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4793885

Reduction of HIV-1 RNA levels with therapy to suppress herpes simplex virus

27 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4793885

Envelope-constrained neutralization-sensitive HIV-1 after heterosexual transmission

27 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4793885

HLA allele sharing and HIV type 1 viremia in seroconverting Zambians with known transmitting partners

27 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4793885

HIV evolution: CTL escape mutation and reversion after transmission

27 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4793885

Suppression of human immunodeficiency virus replication during acute measles

27 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4793885

Acute sexually transmitted infections increase human immunodeficiency virus type 1 plasma viremia, increase plasma type 2 cytokines, and decrease CD4 cell counts

27 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4793885

Human immunodeficiency virus type 1 shedding pattern in semen correlates with the compartmentalization of viral Quasi species between blood and semen.

27 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4793885

Critical role for β7 integrins in formation of the gut-associated lymphoid tissue

27 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4793885

Vpu serine 52 dependent counteraction of tetherin is required for HIV-1 replication in macrophages, but not in ex vivo human lymphoid tissue

27 November 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO3471

Sexually transmitted diseases enhance HIV transmission: no longer a hypothesis

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO3471

Reduction of concentration of HIV-1 in semen after treatment of urethritis: implications for prevention of sexual transmission of HIV-1

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO3471

Conjugates of dendritic cells and memory T lymphocytes from skin facilitate productive infection with HIV-1

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO3471

CD4 T cells remain the major source of HIV-1 during end stage disease

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO3471

Sexual Transmission and Propagation of SIV and HIV in Resting and Activated CD4+ T Cells

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO3471

Long-acting HIV drugs advanced to overcome adherence challenge

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO3471

Reduction of concentration of HIV-1 in semen after treatment of urethritis: implications for prevention of sexual transmission of HIV-1. AIDSCAP Malawi Research Group

31 March 2020

1 reference

https://pubmed.ncbi.nlm.nih.gov/26052661

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1038/NRMICRO3471

1 reference

Dimensions Publication ID

1003648870

0 references

1 reference

1 reference

PubMed publication ID

26052661

1 reference