Structure and mechanism of a bacterial light-regulated cyclic nucleotide phosphodiesterase (Q27656038)

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English	Structure and mechanism of a bacterial light-regulated cyclic nucleotide phosphodiesterase	scientific article

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instance of

scholarly article

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title

Structure and mechanism of a bacterial light-regulated cyclic nucleotide phosphodiesterase (English)

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author

Ilme Schlichting

series ordinal

10

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author name string

Thomas R M Barends

series ordinal

1

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Elisabeth Hartmann

series ordinal

2

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Julia J Griese

series ordinal

3

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Thorsten Beitlich

series ordinal

4

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Natalia V Kirienko

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5

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Dmitri A Ryjenkov

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6

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Jochen Reinstein

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7

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Robert L Shoeman

series ordinal

8

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Mark Gomelsky

series ordinal

9

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language of work or name

English

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publication date

18 June 2009

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published in

Nature

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volume

459

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issue

7249

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page(s)

1015-8

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cites work

Molecular models predict light-induced glutamine tautomerization in BLUF photoreceptors

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Automated structure solution, density modification and model building

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Structure of a novel photoreceptor, the BLUF domain of AppA from Rhodobacter sphaeroides

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The mechanism of cyclic nucleotide hydrolysis in the phosphodiesterase catalytic site

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Version 1.2 of the Crystallography and NMR system

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AppA, a redox regulator of photosystem formation in Rhodobacter sphaeroides 2.4.1, is a flavoprotein. Identification of a novel fad binding domain.

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PubMed

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https://pubmed.ncbi.nlm.nih.gov/19536266

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Structure of a cyanobacterial BLUF protein, Tll0078, containing a novel FAD-binding blue light sensor domain

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https://pubmed.ncbi.nlm.nih.gov/19536266

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Crystal structures of the Synechocystis photoreceptor Slr1694 reveal distinct structural states related to signaling

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Catalytic mechanism of cyclic di-GMP-specific phosphodiesterase: a study of the EAL domain-containing RocR from Pseudomonas aeruginosa

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Crystal Structures of YkuI and Its Complex with Second Messenger Cyclic Di-GMP Suggest Catalytic Mechanism of Phosphodiester Bond Cleavage by EAL Domains

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PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/19536266

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Structure of a bacterial BLUF photoreceptor: insights into blue light-mediated signal transduction

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PubMed

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https://pubmed.ncbi.nlm.nih.gov/19536266

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Analysis of Pseudomonas aeruginosa diguanylate cyclases and phosphodiesterases reveals a role for bis-(3'-5')-cyclic-GMP in virulence

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PubMed

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https://pubmed.ncbi.nlm.nih.gov/19536266

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based on heuristic

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The ubiquitous protein domain EAL is a cyclic diguanylate-specific phosphodiesterase: enzymatically active and inactive EAL domains

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PubMed

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https://pubmed.ncbi.nlm.nih.gov/19536266

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The structural basis of cyclic diguanylate signal transduction by PilZ domains

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PubMed

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Crystallography & NMR System: A New Software Suite for Macromolecular Structure Determination

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The cyclic diguanylic acid regulatory system of cellulose synthesis in Acetobacter xylinum. Chemical synthesis and biological activity of cyclic nucleotide dimer, trimer, and phosphothioate derivatives

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Pfam: clans, web tools and services

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12 December 2020

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A conclusive mechanism of the photoinduced reaction cascade in blue light using flavin photoreceptors

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PubMed

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Catalysis of the hydrolysis of phosphorylated pyridines by Mg(OH)+: a possible model for enzymatic phosphoryl transfer

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PubMed

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https://pubmed.ncbi.nlm.nih.gov/19536266

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12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Refinement of macromolecular structures by the maximum-likelihood method

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PubMed

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12 December 2020

based on heuristic

inferred from PubMed ID database lookup

A glutamate-alanine-leucine (EAL) domain protein of Salmonella controls bacterial survival in mice, antioxidant defence and killing of macrophages: role of cyclic diGMP.

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PubMed

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https://pubmed.ncbi.nlm.nih.gov/19536266

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based on heuristic

inferred from PubMed ID database lookup

SOLVE and RESOLVE: automated structure solution, density modification and model building

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PubMed

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https://pubmed.ncbi.nlm.nih.gov/19536266

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12 December 2020

based on heuristic

inferred from PubMed ID database lookup

First computational evidence for a catalytic bridging hydroxide ion in a phosphodiesterase active site

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PubMed

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https://pubmed.ncbi.nlm.nih.gov/19536266

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12 December 2020

based on heuristic

inferred from PubMed ID database lookup

The flagellar sigma factor FliA regulates adhesion and invasion of Crohn disease-associated Escherichia coli via a cyclic dimeric GMP-dependent pathway.

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PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/19536266

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12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Structure and insight into blue light-induced changes in the BlrP1 BLUF domain

1 reference

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PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/19536266

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12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Determination of the sedimentation coefficient distribution by least-squares boundary modeling

1 reference

stated in

PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/19536266

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Crystal structures of the AppA BLUF domain photoreceptor provide insights into blue light-mediated signal transduction

1 reference

stated in

PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/19536266

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

BLUF: a novel FAD-binding domain involved in sensory transduction in microorganisms

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stated in

PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/19536266

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Aminoglycoside antibiotics induce bacterial biofilm formation

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PubMed

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https://pubmed.ncbi.nlm.nih.gov/19536266

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12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Coot: model-building tools for molecular graphics

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PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/19536266

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Structural requirements for key residues and auxiliary portions of a BLUF domain

1 reference

stated in

PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/19536266

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Hydrogen-bond switching through a radical pair mechanism in a flavin-binding photoreceptor

1 reference

stated in

PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/19536266

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

SOLVE and RESOLVE: automated structure solution and density modification

1 reference

stated in

PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/19536266

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

XtalView/Xfit--A versatile program for manipulating atomic coordinates and electron density

1 reference

stated in

PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/19536266

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Automated structure solution with autoSHARP

1 reference

stated in

PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/19536266

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Enzymes do what is expected (chalcone isomerase versus chorismate mutase).

1 reference

stated in

PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/19536266

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Automatic processing of rotation diffraction data from crystals of initially unknown symmetry and cell constants

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Crossref

reference URL

https://api.crossref.org/works/10.1038%2FNATURE07966

retrieved

7 January 2021

based on heuristic

inferred from DOI database lookup

Identifiers

DOI

10.1038/NATURE07966

1 reference

stated in

Consolidated OpenCitations Corpus – April 2017

OpenCitations bibliographic resource ID

839315

Dimensions Publication ID

1036438887

0 references

OpenCitations bibliographic resource ID

839315

1 reference

stated in

Consolidated OpenCitations Corpus – April 2017

OpenCitations bibliographic resource ID

839315

PubMed publication ID

19536266

1 reference

stated in

Consolidated OpenCitations Corpus – April 2017

OpenCitations bibliographic resource ID

839315

 

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