Structural insights into the cooperative binding of SeqA to a tandem GATC repeat (Q27654234)

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English	Structural insights into the cooperative binding of SeqA to a tandem GATC repeat	scientific article

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instance of

scholarly article

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title

Structural insights into the cooperative binding of SeqA to a tandem GATC repeat (English)

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author name string

Yu Seon Chung

series ordinal

1

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Therese Brendler

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2

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Stuart Austin

series ordinal

3

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Alba Guarné

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4

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language of work or name

English

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publication date

June 2009

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published in

Nucleic Acids Research

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volume

37

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issue

10

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page(s)

3143-52

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describes a project that uses

ImageJ

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stated in

Europe PubMed Central

retrieved

11 June 2022

reference URL

https://www.ebi.ac.uk/europepmc/webservices/rest/PMC2691817/fullTextXML

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inferred from PubMed Central ID database lookup

cites work

Structural and dynamics study of DNA dodecamer duplexes that contain un-, hemi-, or fully methylated GATC sites

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PubMed Central

reference URL

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20 March 2017

Dimeric configuration of SeqA protein bound to a pair of hemi-methylated GATC sequences

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PubMed Central

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20 March 2017

Building a bacterial orisome: emergence of new regulatory features for replication origin unwinding

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20 March 2017

Structural and biochemical analyses of hemimethylated DNA binding by the SeqA protein

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20 March 2017

Structure and dynamics of hemimethylated GATC sites: implications for DNA-SeqA recognition

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PubMed Central

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20 March 2017

Insights into negative modulation of E. coli replication initiation from the structure of SeqA-hemimethylated DNA complex

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PubMed Central

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20 March 2017

The crystal structure of the trigonal decamer C-G-A-T-C-G-6meA-T-C-G: a B-DNA helix with 10.6 base-pairs per turn

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20 March 2017

Phasercrystallographic software

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PubMed Central

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20 March 2017

Macromolecular TLS refinement in REFMAC at moderate resolutions

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PubMed Central

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20 March 2017

The stringent response and cell cycle arrest in Escherichia coli

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29 September 2017

Crystallization and preliminary X-ray diffraction analysis of SeqA bound to a pair of hemimethylated GATC sites

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PubMed Central

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29 September 2017

Crystal structure of a SeqA-N filament: implications for DNA replication and chromosome organization

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29 September 2017

SeqA Protein Stimulates the Relaxing and Decatenating Activities of Topoisomerase IV

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PubMed Central

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29 September 2017

Sequential binding of SeqA to paired hemi-methylated GATC sequences mediates formation of higher order complexes

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PubMed Central

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29 September 2017

Controlled initiation of chromosomal replication in Escherichia coli requires functional Hda protein

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PubMed Central

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29 September 2017

Excess SeqA prolongs sequestration of oriC and delays nucleoid segregation and cell division

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PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2691817

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29 September 2017

A standard reference frame for the description of nucleic acid base-pair geometry.

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PubMed Central

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29 September 2017

Escherichia coli cell cycle control genes affect chromosome superhelicity

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PubMed Central

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29 September 2017

A case for sliding SeqA tracts at anchored replication forks during Escherichia coli chromosome replication and segregation

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PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2691817

retrieved

29 September 2017

Binding of SeqA protein to DNA requires interaction between two or more complexes bound to separate hemimethylated GATC sequences

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2691817

retrieved

29 September 2017

Negative control of replication initiation by a novel chromosomal locus exhibiting exceptional affinity for Escherichia coli DnaA protein

1 reference

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PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2691817

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29 September 2017

Polar localization of the replication origin and terminus in Escherichia coli nucleoids during chromosome partitioning.

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2691817

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29 September 2017

Coordinating DNA replication initiation with cell growth: differential roles for DnaA and SeqA proteins

1 reference

stated in

PubMed Central

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2691817

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29 September 2017

A protein that binds to the P1 origin core and the oriC 13mer region in a methylation-specific fashion is the product of the host seqA gene

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2691817

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29 September 2017

Excess SeqA leads to replication arrest and a cell division defect in Vibrio cholerae

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PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2691817

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2 June 2018

3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures

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PubMed Central

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2691817

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2 June 2018

SeqA blocking of DnaA-oriC interactions ensures staged assembly of the E. coli pre-RC.

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PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2691817

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2 June 2018

Co-ordination between membrane oriC sequestration factors and a chromosome partitioning protein, TolC (MukA).

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PubMed Central

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2691817

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2 June 2018

SeqA: a negative modulator of replication initiation in E. coli

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PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2691817

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2 June 2018

Aggregation of SeqA protein requires positively charged amino acids in the hinge region.

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2691817

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27 November 2018

The role of replication initiation control in promoting survival of replication fork damage.

1 reference

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PubMed Central

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2691817

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27 November 2018

MutH complexed with hemi- and unmethylated DNAs: coupling base recognition and DNA cleavage

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PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2691817

retrieved

27 November 2018

Sequential binding of SeqA protein to nascent DNA segments at replication forks in synchronized cultures of Escherichia coli.

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2691817

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27 November 2018

Escherichia coli prereplication complex assembly is regulated by dynamic interplay among Fis, IHF and DnaA.

1 reference

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PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2691817

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27 November 2018

The assembly and migration of SeqA-Gfp fusion in living cells of Escherichia coli

1 reference

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PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/19304745

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Mutual suppression of mukB and seqA phenotypes might arise from their opposing influences on the Escherichia coli nucleoid structure

1 reference

stated in

PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/19304745

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

The rate of Dam-mediated DNA adenine methylation in Escherichia coli

1 reference

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PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/19304745

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Analysis of DNA replication in vivo by flow cytometry

1 reference

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PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/19304745

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Bidirectional migration of SeqA-bound hemimethylated DNA clusters and pairing of oriC copies in Escherichia coli

1 reference

stated in

PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/19304745

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Specific N-terminal interactions of the Escherichia coli SeqA protein are required to form multimers that restrain negative supercoils and form foci

1 reference

stated in

PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/19304745

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Identifiers

DOI

10.1093/NAR/GKP151

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PMC publication ID

2691817

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PubMed publication ID

19304745

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ResearchGate publication ID

24218171

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