De&#160;novo identification of replication-timing domains in the human genome by deep learning (Q27304405)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26545821%20AND%20SRC:MED&resulttype=core&format=json

29 February 2020

title

De novo identification of replication-timing domains in the human genome by deep learning (English)

1 reference

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29 February 2020

1 reference

1 reference

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29 February 2020

Feng Liu

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26545821%20AND%20SRC:MED&resulttype=core&format=json

29 February 2020

Chao Ren

1 reference

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29 February 2020

Hao Li

1 reference

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29 February 2020

Pingkun Zhou

1 reference

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29 February 2020

Xiaochen Bo

1 reference

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29 February 2020

language of work or name

English

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publication date

5 November 2015

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29 February 2020

number of pages

1 reference

based on heuristic

inferred from page(s)

published in

Bioinformatics

1 reference

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29 February 2020

volume

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29 February 2020

issue

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29 February 2020

page(s)

641-649

1 reference

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Creative Commons Attribution-NonCommercial 4.0 International

29 February 2020

start time

12 October 2016

1 reference

April 2023 Public Data File from Crossref

copyrighted

0 references

describes a project that uses

1 reference

Mutations in the pre-replication complex cause Meier-Gorlin syndrome

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4795613

Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project

21 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4795613

DNA replication in eukaryotic cells

21 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4795613

Comprehensive mapping of long-range interactions reveals folding principles of the human genome

21 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4795613

Discovery and characterization of chromatin states for systematic annotation of the human genome

21 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4795613

Topologically associating domains are stable units of replication-timing regulation

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4795613

Deep learning of the tissue-regulated splicing code

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4795613

Representation learning: a review and new perspectives

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4795613

Aberrant DNA replication in cancer.

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4795613

Unsupervised pattern discovery in human chromatin structure through genomic segmentation

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4795613

ChromHMM: automating chromatin-state discovery and characterization

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4795613

Cell-type-specific replication initiation programs set fragility of the FRA3B fragile site

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4795613

Evolutionarily conserved replication timing profiles predict long-range chromatin interactions and distinguish closely related cell types

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4795613

Eukaryotic chromosome DNA replication: where, when, and how?

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4795613

Sequencing newly replicated DNA reveals widespread plasticity in human replication timing

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4795613

Chromatin state marks cell-type- and gender-specific replication of the Drosophila genome

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4795613

Global organization of replication time zones of the mouse genome

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4795613

High-throughput mapping of origins of replication in human cells

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4795613

Cell cycle regulation of DNA replication.

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4795613

Pan-S replication patterns and chromosomal domains defined by genome-tiling arrays of ENCODE genomic areas

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4795613

Unsupervised segmentation of continuous genomic data

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4795613

A faster circular binary segmentation algorithm for the analysis of array CGH data

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4795613

Reducing the dimensionality of data with neural networks

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4795613

A fast learning algorithm for deep belief nets

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4795613

Replication timing of human chromosome 6.

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4795613

Comparing the success of different prediction software in sequence analysis: a review

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4795613

RNA splicing. The human splicing code reveals new insights into the genetic determinants of disease

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4795613

Mutations in ORC1, encoding the largest subunit of the origin recognition complex, cause microcephalic primordial dwarfism resembling Meier-Gorlin syndrome

31 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4795613

Identification of higher-order functional domains in the human ENCODE regions

31 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4795613

Coordination of replication and transcription along a Drosophila chromosome.

31 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4795613

Context-Dependent Pre-Trained Deep Neural Networks for Large-Vocabulary Speech Recognition

31 May 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTV643

Mutations in origin recognition complex gene ORC4 cause Meier-Gorlin syndrome

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTV643

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTV643

Replication dynamics of the yeast genome.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTV643

Genome-wide DNA replication profile for Drosophila melanogaster: a link between transcription and replication timing

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTV643

DNA replication timing and selection shape the landscape of nucleotide variation in cancer genomes

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTV643

DNA replication timing data corroborate in silico human replication origin predictions

21 January 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/26545821

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12 December 2020

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Identifiers

DOI

10.1093/BIOINFORMATICS/BTV643

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26545821%20AND%20SRC:MED&resulttype=core&format=json

journals/bioinformatics/LiuRLZBS16

29 February 2020

DBLP publication ID

1 reference

DBLP Dataset 2021-01-02

OpenCitations bibliographic resource ID

28 January 2021

572916

1 reference

Consolidated OpenCitations Corpus – April 2017

OpenCitations bibliographic resource ID

2 references

Consolidated OpenCitations Corpus – April 2017

OpenCitations bibliographic resource ID

572916

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26545821%20AND%20SRC:MED&resulttype=core&format=json

29 February 2020

PubMed publication ID

26545821

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26545821%20AND%20SRC:MED&resulttype=core&format=json