Hydrogen bond dynamics in membrane protein function (Q26863353)

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English	Hydrogen bond dynamics in membrane protein function	scientific article

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title

Hydrogen bond dynamics in membrane protein function (English)

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author

Ana-Nicoleta Bondar

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Ana-Nicoleta Bondar

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1

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Stephen H. White

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Stephen H. White

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language of work or name

English

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publication date

April 2012

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published in

Biochimica et Biophysica Acta

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volume

1818

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PubMed

issue

4

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page(s)

942-50

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cites work

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21 March 2017

Structure of Rhomboid Protease in a Lipid Environment

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21 March 2017

Lateral opening of a translocon upon entry of protein suggests the mechanism of insertion into membranes

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21 March 2017

Conformational transition of Sec machinery inferred from bacterial SecYE structures

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21 March 2017

Structure of a complex of the ATPase SecA and the protein-translocation channel

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21 March 2017

Electrostatic effects in a network of polar and ionizable groups in staphylococcal nuclease

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21 March 2017

Open-cap conformation of intramembrane protease GlpG

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21 March 2017

Structural basis for intramembrane proteolysis by rhomboid serine proteases

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21 March 2017

X-ray structure of a protein-conducting channel

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21 March 2017

All-atom empirical potential for molecular modeling and dynamics studies of proteins

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21 March 2017

VMD: visual molecular dynamics

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PubMed Central

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21 March 2017

Mitochondrial membrane remodelling regulated by a conserved rhomboid protease

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21 March 2017

Identification of signal peptide peptidase, a presenilin-type aspartic protease

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21 March 2017

Presenilin is required for activity and nuclear access of Notch in Drosophila

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21 March 2017

The SREBP pathway: regulation of cholesterol metabolism by proteolysis of a membrane-bound transcription factor

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21 March 2017

Atomic-Level Characterization of the Structural Dynamics of Proteins

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7 April 2017

A hierarchy of timescales in protein dynamics is linked to enzyme catalysis

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7 April 2017

How fast-folding proteins fold

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PubMed Central

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28 September 2017

Activation mechanism of the β2-adrenergic receptor

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28 September 2017

In silico partitioning and transmembrane insertion of hydrophobic peptides under equilibrium conditions

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28 September 2017

Apolar surface area determines the efficiency of translocon-mediated membrane-protein integration into the endoplasmic reticulum

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28 September 2017

Regulated Intramembrane Proteolysis: Signaling Pathways and Biological Functions

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PubMed Central

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28 September 2017

Lipid-binding surfaces of membrane proteins: evidence from evolutionary and structural analysis

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PubMed Central

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28 September 2017

Membrane protein folding: how important are hydrogen bonds?

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stated in

PubMed Central

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3288666

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28 September 2017

Dynamics of SecY translocons with translocation-defective mutations

1 reference

stated in

PubMed Central

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28 September 2017

Insertion of short transmembrane helices by the Sec61 translocon

1 reference

stated in

PubMed Central

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28 September 2017

The lateral gate of SecYEG opens during protein translocation

1 reference

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PubMed Central

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28 September 2017

Rhomboid protease dynamics and lipid interactions

1 reference

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PubMed Central

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28 September 2017

How translocons select transmembrane helices

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PubMed Central

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28 September 2017

Crystal structure of the plasma membrane proton pump.

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PubMed Central

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28 September 2017

Illuminating the mechanistic roles of enzyme conformational dynamics

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PubMed Central

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3288666

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28 September 2017

Conformational complexity of G-protein-coupled receptors

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stated in

PubMed Central

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28 September 2017

Enzymatic analysis of a rhomboid intramembrane protease implicates transmembrane helix 5 as the lateral substrate gate

1 reference

stated in

PubMed Central

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28 September 2017

Nanodiscs unravel the interaction between the SecYEG channel and its cytosolic partner SecA.

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3288666

retrieved

28 September 2017

Bilayer thickness and membrane protein function: an energetic perspective.

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stated in

PubMed Central

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3288666

retrieved

28 September 2017

Structural analysis of a rhomboid family intramembrane protease reveals a gating mechanism for substrate entry

1 reference

stated in

PubMed Central

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3288666

retrieved

28 September 2017

How hydrogen bonds shape membrane protein structure.

1 reference

stated in

PubMed Central

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3288666

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28 September 2017

Changes in interhelical hydrogen bonding upon rhodopsin activation

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stated in

PubMed Central

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3288666

retrieved

28 September 2017

Reconstitution of intramembrane proteolysis in vitro reveals that pure rhomboid is sufficient for catalysis and specificity

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PubMed Central

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3288666

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28 September 2017

Lipids do influence protein function-the hydrophobic matching hypothesis revisited

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PubMed Central

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3288666

retrieved

28 September 2017

How lipids affect the activities of integral membrane proteins

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stated in

PubMed Central

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3288666

retrieved

28 September 2017

Lipids in membrane protein structures

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stated in

PubMed Central

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3288666

retrieved

28 September 2017

Intramembrane proteolysis: theme and variations.

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stated in

PubMed Central

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3288666

retrieved

28 September 2017

Drosophila rhomboid-1 defines a family of putative intramembrane serine proteases

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PubMed Central

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28 September 2017

Structure and function in rhodopsin: Rhodopsin mutants with a neutral amino acid at E134 have a partially activated conformation in the dark state

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PubMed Central

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28 September 2017

Modulation of rhodopsin function by properties of the membrane bilayer

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PubMed Central

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28 September 2017

Signal sequence recognition in posttranslational protein transport across the yeast ER membrane.

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PubMed Central

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31 May 2018

Functional role of the "ionic lock"--an interhelical hydrogen-bond network in family A heptahelical receptors.

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PubMed Central

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28 November 2018

Interactions between phosphatidylethanolamine headgroup and LmrP, a multidrug transporter: a conserved mechanism for proton gradient sensing?

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PubMed Central

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28 November 2018

Mutations in the Sec61p Channel Affecting Signal Sequence Recognition and Membrane Protein Topology

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PubMed Central

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3288666

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28 November 2018

Crystal structure of a rhomboid family intramembrane protease.

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3288666

retrieved

28 November 2018

The retinal conformation and its environment in rhodopsin in light of a new 2.2 A crystal structure

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PubMed Central

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3288666

retrieved

28 November 2018

Interhelical hydrogen bonds and spatial motifs in membrane proteins: polar clamps and serine zippers

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stated in

PubMed Central

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3288666

retrieved

28 November 2018

Identifiers

DOI

10.1016/J.BBAMEM.2011.11.035

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PMC publication ID

3288666

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PubMed

PubMed publication ID

22178866

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PubMed

ResearchGate publication ID

51897440

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